| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G002034_T02 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 45248.3 Isoelectric Point: 6.5609 |
| Chromosome | Chromosome/Scaffold: 8 Start: 73851489 End: 73854311 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 47 | 369 | 0 |
| AAACKVEASTVLVPSGLEFVVGPISFSGPYCKPNILFQLDGTILAQTSARAWGSAGLLQWLEFTKLTGIAVQGSGVINGRGQDWWTYADPNDADDESVEM LLPRTKPTALRFYGSSNVTVAGITIVNSSQCHLKFDSCEGVMVHDLSVSSPEDSPNTDGIHLQNSRGVDIHHATLACGDDCISIQTGCSDVNIHSVNCGP GHGISIGGLGRFNTKACVSNVTVRDVKMFRTTTGVRIKTWQGGSGLVQGVRFSNIQVTEVQTPIMIDQFYCDRATCRNQTSAVAVSGVQYEDVRGTFTVR PAHLACSDSSPCSGITLAGIQLQ | |||
| Full Sequence |
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| Protein Sequence Length: 422 Download |
| MFSLHSQGYR YLDQGITSVL CRSDALIHGL KMSVKLNNRQ AFEAAWAAAC KVEASTVLVP 60 SGLEFVVGPI SFSGPYCKPN ILFQLDGTIL AQTSARAWGS AGLLQWLEFT KLTGIAVQGS 120 GVINGRGQDW WTYADPNDAD DESVEMLLPR TKPTALRFYG SSNVTVAGIT IVNSSQCHLK 180 FDSCEGVMVH DLSVSSPEDS PNTDGIHLQN SRGVDIHHAT LACGDDCISI QTGCSDVNIH 240 SVNCGPGHGI SIGGLGRFNT KACVSNVTVR DVKMFRTTTG VRIKTWQGGS GLVQGVRFSN 300 IQVTEVQTPI MIDQFYCDRA TCRNQTSAVA VSGVQYEDVR GTFTVRPAHL ACSDSSPCSG 360 ITLAGIQLQP LPLPQHRRLS YDPFCWQAFG ELYTPTVPPI PCLQIGRPAA GNSVLSDGDL 420 C* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-58 | 56 | 363 | 313 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-60 | 55 | 366 | 314 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-63 | 56 | 363 | 312 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-75 | 55 | 366 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-79 | 55 | 403 | 351 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF79104.1 | 0 | 29 | 421 | 104 | 496 | unknown [Zea mays] |
| GenBank | ACN27989.1 | 0 | 1 | 421 | 1 | 421 | unknown [Zea mays] |
| GenBank | ACR36869.1 | 0 | 1 | 421 | 1 | 421 | unknown [Zea mays] |
| GenBank | EEC79746.1 | 0 | 37 | 421 | 148 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
| RefSeq | NP_001141617.1 | 0 | 29 | 421 | 145 | 537 | hypothetical protein LOC100273736 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-26 | 72 | 316 | 53 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 7e-20 | 122 | 369 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-20 | 122 | 369 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-20 | 122 | 369 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-20 | 122 | 369 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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