| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G004435_T02 |
| Family | GH28 |
| Protein Properties | Length: 494 Molecular Weight: 53177.2 Isoelectric Point: 6.4522 |
| Chromosome | Chromosome/Scaffold: 6 Start: 1239619 End: 1242853 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 123 | 468 | 0 |
| GARLDVPPGRWLTGSFNLTSRFTLFLHRGAVILGSQDPEEWPLITPLPSYGRGRERLGPRHISLIHGEGLNDVVITGSNGTIDGQGHMWWELWRNRTLNH TRGHLIELVNSTNVLISSVTLSNSPFWTVHPVYCSNVVMKDLTILAPLDAPNTDGIDPDSSSEVCIEDCYIESGDDLVAVKSGWDQYGISFGKPSTNIVI QRVSGTTPTCSGVGFGSEMSGGISNVLVRDLHVWNSAQAVRLKTDVGRGGYITNITIASVAMEKVKVPIRFSRGADDHPDDRYDPAALPRISNVLVSDVV GVHLQRAPMLEAVPGAVYEGICFRNFSFRGIRRQQDSRWHCESVYG | |||
| Full Sequence |
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| Protein Sequence Length: 494 Download |
| MAARAKAAAV DDHDPMPPPL PLPWPRPAPL LVMLSLLATA SYLALTRFPA ALLPIAPRSR 60 PHDAPAHAPG DSCAGFYAGA GPAREVWASV EEFGAVGDGA TLNTAAFRRA VAELGARAVG 120 GGGARLDVPP GRWLTGSFNL TSRFTLFLHR GAVILGSQDP EEWPLITPLP SYGRGRERLG 180 PRHISLIHGE GLNDVVITGS NGTIDGQGHM WWELWRNRTL NHTRGHLIEL VNSTNVLISS 240 VTLSNSPFWT VHPVYCSNVV MKDLTILAPL DAPNTDGIDP DSSSEVCIED CYIESGDDLV 300 AVKSGWDQYG ISFGKPSTNI VIQRVSGTTP TCSGVGFGSE MSGGISNVLV RDLHVWNSAQ 360 AVRLKTDVGR GGYITNITIA SVAMEKVKVP IRFSRGADDH PDDRYDPAAL PRISNVLVSD 420 VVGVHLQRAP MLEAVPGAVY EGICFRNFSF RGIRRQQDSR WHCESVYGEA HDVFPAPCEE 480 FRRDGSSSWC GLL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-18 | 181 | 391 | 219 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-19 | 90 | 391 | 318 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-24 | 90 | 423 | 357 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-30 | 187 | 391 | 213 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-58 | 88 | 401 | 340 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05322.1 | 0 | 71 | 491 | 62 | 480 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
| GenBank | EAZ41253.1 | 0 | 71 | 491 | 62 | 480 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060796.1 | 0 | 71 | 491 | 62 | 480 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148255.1 | 0 | 1 | 493 | 1 | 493 | polygalacturonase [Zea mays] |
| RefSeq | XP_002443718.1 | 0 | 11 | 493 | 14 | 497 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.99995e-41 | 82 | 454 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.99995e-41 | 82 | 454 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.99995e-41 | 82 | 454 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.99995e-41 | 82 | 454 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000002 | 202 | 466 | 117 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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