| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G004435_T04 |
| Family | GH28 |
| Protein Properties | Length: 281 Molecular Weight: 30322.6 Isoelectric Point: 7.4752 |
| Chromosome | Chromosome/Scaffold: 6 Start: 1239681 End: 1242853 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 123 | 260 | 6.8e-27 |
| GARLDVPPGRWLTGSFNLTSRFTLFLHRGAVILGSQDPEEWPLITPLPSYGRGRERLGPRHISLIHGEGLNDVVITGSNGTIDGQGHMWWELWRNRTLNH TRGHLIELVNSTNVLISSVTLSNSPFWTVHPVYCRSVL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 281 Download |
| MAARAKAAAV DDHDPMPPPL PLPWPRPAPL LVMLSLLATA SYLALTRFPA ALLPIAPRSR 60 PHDAPAHAPG DSCAGFYAGA GPAREVWASV EEFGAVGDGA TLNTAAFRRA VAELGARAVG 120 GGGARLDVPP GRWLTGSFNL TSRFTLFLHR GAVILGSQDP EEWPLITPLP SYGRGRERLG 180 PRHISLIHGE GLNDVVITGS NGTIDGQGHM WWELWRNRTL NHTRGHLIEL VNSTNVLISS 240 VTLSNSPFWT VHPVYCRSVL ASWFDPLHFL LEEHFHSISM * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.002 | 187 | 248 | 63 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 0.0003 | 90 | 223 | 137 | + Probable polygalacturonase | ||
| pfam12708 | Pectate_lyase_3 | 5.0e-5 | 87 | 242 | 164 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| COG5434 | PGU1 | 9.0e-22 | 88 | 256 | 193 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05322.1 | 0 | 71 | 260 | 62 | 251 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
| GenBank | EAZ41253.1 | 0 | 71 | 260 | 62 | 251 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060796.1 | 0 | 71 | 260 | 62 | 251 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148255.1 | 0 | 1 | 260 | 1 | 260 | polygalacturonase [Zea mays] |
| RefSeq | XP_002443718.1 | 0 | 11 | 260 | 14 | 266 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00000000004 | 82 | 260 | 24 | 225 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00000000004 | 82 | 260 | 24 | 225 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00000000004 | 82 | 260 | 24 | 225 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00000000004 | 82 | 260 | 24 | 225 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000009 | 83 | 208 | 152 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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