| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G023650_T01 |
| Family | GH18 |
| Protein Properties | Length: 308 Molecular Weight: 33344.9 Isoelectric Point: 8.3761 |
| Chromosome | Chromosome/Scaffold: 3 Start: 176676857 End: 176678050 |
| Description | chitinase A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 36 | 256 | 9e-30 |
| SIAVYWGQNDGESSLSDTCASGNYKFVVIAFVYKFGKGQTPELNLAGHCDPSSGGCKCLSKDIRSCQRRGVKVLLSIGGADGSYGLASERDAREVAEYLW NNYLGGNSSSRPLGDAVLDGVDFDIERGGAKYWDVLARELKDMGKEKDGNAVLLSAAPQCPFPDEWDDGAIKTGLFDFVWVQFYNNPPCQVSAGPRAFLH AWKRWQSVPAGQIFLGLPASK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 308 Download |
| MTAKNQNMAA RELTRLHLQL VAIVLVAILA TCHAGSIAVY WGQNDGESSL SDTCASGNYK 60 FVVIAFVYKF GKGQTPELNL AGHCDPSSGG CKCLSKDIRS CQRRGVKVLL SIGGADGSYG 120 LASERDAREV AEYLWNNYLG GNSSSRPLGD AVLDGVDFDI ERGGAKYWDV LARELKDMGK 180 EKDGNAVLLS AAPQCPFPDE WDDGAIKTGL FDFVWVQFYN NPPCQVSAGP RAFLHAWKRW 240 QSVPAGQIFL GLPASKSAAG TGFVPAGKLT SQVLPLIRRS RKYGGVMLWA KFYDDHTGYS 300 DAIKRHV* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd06545 | GH18_3CO4_chitinase | 6.0e-9 | 94 | 301 | 230 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
| cd02871 | GH18_chitinase_D-like | 2.0e-12 | 40 | 300 | 315 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
| COG3469 | COG3469 | 1.0e-12 | 96 | 297 | 235 | + Chitinase [Carbohydrate transport and metabolism] | ||
| pfam00704 | Glyco_hydro_18 | 4.0e-32 | 35 | 255 | 248 | + Glycosyl hydrolases family 18. | ||
| cd02877 | GH18_hevamine_XipI_class_III | 5.0e-133 | 35 | 305 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY76568.1 | 0 | 8 | 307 | 1 | 297 | hypothetical protein OsI_04514 [Oryza sativa Indica Group] |
| RefSeq | NP_001044871.1 | 0 | 8 | 307 | 1 | 297 | Os01g0860400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002456669.1 | 0 | 8 | 307 | 1 | 300 | hypothetical protein SORBIDRAFT_03g040560 [Sorghum bicolor] |
| RefSeq | XP_002456670.1 | 0 | 32 | 307 | 23 | 299 | hypothetical protein SORBIDRAFT_03g040580 [Sorghum bicolor] |
| RefSeq | XP_002458804.1 | 0 | 32 | 307 | 23 | 299 | hypothetical protein SORBIDRAFT_03g040570 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gsj_A | 0 | 35 | 307 | 1 | 271 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
| PDB | 2hvm_A | 0 | 35 | 307 | 1 | 273 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
| PDB | 1llo_A | 0 | 35 | 307 | 1 | 273 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
| PDB | 1hvq_A | 0 | 35 | 307 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
| PDB | 1kr0_A | 0 | 35 | 307 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
