| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G026855_T01 |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 41930.8 Isoelectric Point: 8.7061 |
| Chromosome | Chromosome/Scaffold: 3 Start: 169078215 End: 169080562 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 55 | 390 | 0 |
| DACRSPLPAAVYVPPGRYLVRSATFTGPCHTRAVTFAVAGTVVAPAAYGARGSSGRWITFENMDGLVVAGGGTLDGRGRALWACRQRGQRDCPTPTSTLT IANSKDVVVAGLRSVDSELFHVVVLQCHGVTVRGVTVEAPADSPNTDGIHLHMSTHVSVYDARISTGDDCISIGPGNSHLWIERVACGPGHGISIGSLGK QQGTEVEAVQNVTVKTTWFTGTMNGLRIKTWGGSKRGFVTGVTFADSTMSGVDNPIIIDQNYCPTSSGCPGAGRSSSIRISDVRYVGIRGSSATPVAVNF DCSRSYPCSGISLQDVALTYQNRAAAKSYCRNVQGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MAMPKPVLSL LVHLHAAVLF LPAPAGGAVY NVLRYGARPD GVTDAAGPFL RAWADACRSP 60 LPAAVYVPPG RYLVRSATFT GPCHTRAVTF AVAGTVVAPA AYGARGSSGR WITFENMDGL 120 VVAGGGTLDG RGRALWACRQ RGQRDCPTPT STLTIANSKD VVVAGLRSVD SELFHVVVLQ 180 CHGVTVRGVT VEAPADSPNT DGIHLHMSTH VSVYDARIST GDDCISIGPG NSHLWIERVA 240 CGPGHGISIG SLGKQQGTEV EAVQNVTVKT TWFTGTMNGL RIKTWGGSKR GFVTGVTFAD 300 STMSGVDNPI IIDQNYCPTS SGCPGAGRSS SIRISDVRYV GIRGSSATPV AVNFDCSRSY 360 PCSGISLQDV ALTYQNRAAA KSYCRNVQGT ALGLVLPPSC L* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-76 | 31 | 397 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-83 | 57 | 387 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-93 | 29 | 401 | 377 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-101 | 30 | 400 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-109 | 29 | 401 | 373 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36955.1 | 0 | 117 | 401 | 1 | 285 | unknown [Zea mays] |
| GenBank | EAZ14447.1 | 0 | 3 | 401 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045053.1 | 0 | 3 | 401 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141204.1 | 0 | 1 | 401 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
| RefSeq | XP_002456767.1 | 0 | 1 | 401 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-18 | 98 | 316 | 85 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-17 | 63 | 345 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-17 | 63 | 345 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-17 | 63 | 345 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-17 | 63 | 345 | 24 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
