| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G030265_T01 |
| Family | GH28 |
| Protein Properties | Length: 419 Molecular Weight: 43917.4 Isoelectric Point: 8.9085 |
| Chromosome | Chromosome/Scaffold: 4 Start: 233223790 End: 233225415 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 75 | 405 | 0 |
| KHACEATGQQKIVIPKGNYLTGALDLVGPCKSSIIIRLDGNLLGTGDLNAYKRNWIEIQNVDNLSINGHGTIDGQGALVWNKNECQRSYNCKILPNSLVL DFVTNAQIRGITLLNSKFFHMNIFGSKNVVIDKVTIKAPGNSPNTDGIHIGDSSNVTISGTTIAVGDDCVSIGPGSKTIRVKGVKCGPGHGISVGSLGRY KDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCAN NLPCQGVQLINVDIKYNRSDNKTMSVCKNAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MAFISSAAMK AAVAALLVFA AVSPAARAVA AEAEAKAKAV GGAPSVPAGS LDIAQLGAKG 60 DGKSDSTPMV LKAWKHACEA TGQQKIVIPK GNYLTGALDL VGPCKSSIII RLDGNLLGTG 120 DLNAYKRNWI EIQNVDNLSI NGHGTIDGQG ALVWNKNECQ RSYNCKILPN SLVLDFVTNA 180 QIRGITLLNS KFFHMNIFGS KNVVIDKVTI KAPGNSPNTD GIHIGDSSNV TISGTTIAVG 240 DDCVSIGPGS KTIRVKGVKC GPGHGISVGS LGRYKDEKDV EDVKVTGCTL AGTTNGLRIK 300 SYEDSKSSLK ATKFLYQDVT MDNVSYPIII DQKYCPNNIC VKSGASKVAV NDVVFKNIHG 360 TSNTPEAITL NCANNLPCQG VQLINVDIKY NRSDNKTMSV CKNAIGKSIG MAKELACV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-78 | 50 | 404 | 362 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-81 | 51 | 417 | 374 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-81 | 51 | 418 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-104 | 78 | 404 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-119 | 52 | 410 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD25264.1 | 0 | 45 | 418 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| GenBank | EEC72677.1 | 0 | 102 | 418 | 68 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
| RefSeq | NP_001046194.1 | 0 | 45 | 418 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141808.1 | 0 | 1 | 418 | 1 | 418 | hypothetical protein LOC100273946 [Zea mays] |
| RefSeq | XP_002451722.1 | 0 | 42 | 418 | 86 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-21 | 137 | 388 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 4e-20 | 141 | 403 | 80 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 4e-20 | 141 | 403 | 80 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 4e-20 | 141 | 403 | 80 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-17 | 75 | 334 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
