| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G034835_T01 |
| Family | GH28 |
| Protein Properties | Length: 463 Molecular Weight: 49633.3 Isoelectric Point: 6.4118 |
| Chromosome | Chromosome/Scaffold: 9 Start: 146528352 End: 146530720 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 109 | 444 | 0 |
| EACNSSAGRSVFLVPEGKAYLLMPVSFRGPCRAASVAAMIKGTLEAPSDRSVWLERGLQEWITFEGVDRLRVLGGGTLDGNGMQWWINSCKLNRSARCVT GPTALYLRRCTRLVVEELQVRDSMQMHVAIAYSRDVAVSRLSITAPAWSPNTDGIHVSNSREVSISRCTIATGDDCVSIVTGSTFVRVTSIFCGPGHGIS IGSLGANNSWAHVSDVLVEKATLLGTTNGVRIKTWQGGYGYAERISFRDISMRNVTNPIIIDQNYCDSARTTTPSSCHDQGSAVAVRNISYRNIHGTSAS RVAISLVCSAALRCDGIRMQDVYLVGEGRYATCSYR | |||
| Full Sequence |
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| Protein Sequence Length: 463 Download |
| MLVPSSPLLS SSPPLHSPEP PPHLRMGGST TTVVVMLIVV LHYYMLLVDG ASWDEVSSEA 60 DGPAPAEGPD DELWLPRAGP PPRVVNVDDY GAADAGVDAA EAFLAAWSEA CNSSAGRSVF 120 LVPEGKAYLL MPVSFRGPCR AASVAAMIKG TLEAPSDRSV WLERGLQEWI TFEGVDRLRV 180 LGGGTLDGNG MQWWINSCKL NRSARCVTGP TALYLRRCTR LVVEELQVRD SMQMHVAIAY 240 SRDVAVSRLS ITAPAWSPNT DGIHVSNSRE VSISRCTIAT GDDCVSIVTG STFVRVTSIF 300 CGPGHGISIG SLGANNSWAH VSDVLVEKAT LLGTTNGVRI KTWQGGYGYA ERISFRDISM 360 RNVTNPIIID QNYCDSARTT TPSSCHDQGS AVAVRNISYR NIHGTSASRV AISLVCSAAL 420 RCDGIRMQDV YLVGEGRYAT CSYRNATVVQ SGYTFPFCSA EM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-83 | 113 | 456 | 351 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-85 | 111 | 443 | 336 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-97 | 113 | 451 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-109 | 113 | 459 | 349 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-117 | 113 | 432 | 320 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53778.1 | 0 | 26 | 462 | 1 | 437 | unknown [Zea mays] |
| GenBank | EAZ26072.1 | 0 | 59 | 462 | 40 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049387.1 | 0 | 59 | 462 | 40 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150245.1 | 0 | 26 | 462 | 1 | 437 | polygalacturonase [Zea mays] |
| RefSeq | XP_002468269.1 | 0 | 59 | 462 | 2 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 9e-19 | 165 | 405 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-19 | 165 | 405 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-19 | 165 | 405 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-19 | 165 | 405 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 9e-19 | 165 | 405 | 54 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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