| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G037431_T01 |
| Family | GH28 |
| Protein Properties | Length: 543 Molecular Weight: 58265.8 Isoelectric Point: 8.1838 |
| Chromosome | Chromosome/Scaffold: 3 Start: 215929238 End: 215932695 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 168 | 495 | 0 |
| AAACTQGASTLLVPPELEFLVGPISFSGPYCKPNIVFQLEGTILAPISAKSWGSGLLQWLEFTKLNGIVIQGNGIINGRGQQWWTYSDPEDEDDDDTYHV EFQRMPQIKPTALRFYGSFNVVVSGITIVNSSQCHLKFDNCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTTLACGDDCISIQTGCSNINIHNVN CGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMNGVRIKTWQGGVGLVQDIRFSNIQVSEVQTPIIIDQFYCDRSTCRNQTSAVAVSGVQYENIRGTF TIKPVHFACSDSLPCSGISLTGVQLRPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 543 Download |
| MKLGAKGLGL LLLLVLLALC STIEVGEARR DRHWRSSRTS SSQLLKKGKG KKTSSRRQYG 60 SNRPSPKPPA SSTPSSGAGG KGNQTPYQPS PNAPHIPRPS PPANGSAHST PKPPTPPSCG 120 KAHQQPSQSQ PPPPATSSQH GAVFNVVDFG AKGDGVTDDT KAFQGAWAAA CTQGASTLLV 180 PPELEFLVGP ISFSGPYCKP NIVFQLEGTI LAPISAKSWG SGLLQWLEFT KLNGIVIQGN 240 GIINGRGQQW WTYSDPEDED DDDTYHVEFQ RMPQIKPTAL RFYGSFNVVV SGITIVNSSQ 300 CHLKFDNCQG VMVHDVTISS PENSLNTDGI HLQNSKDVSI HHTTLACGDD CISIQTGCSN 360 INIHNVNCGP GHGISIGGLG RDNTKACVSN VTVRDVNMFR TMNGVRIKTW QGGVGLVQDI 420 RFSNIQVSEV QTPIIIDQFY CDRSTCRNQT SAVAVSGVQY ENIRGTFTIK PVHFACSDSL 480 PCSGISLTGV QLRPVQVPHY HLNNPFCWQA FGELYTPTVP PIACLQIGKP AGNNLQSYDD 540 IC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-64 | 140 | 492 | 358 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-67 | 144 | 493 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-69 | 171 | 492 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-72 | 145 | 493 | 353 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-84 | 143 | 525 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 1 | 542 | 1 | 541 | unknown [Zea mays] |
| RefSeq | NP_001043666.1 | 0 | 20 | 542 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 1 | 542 | 1 | 541 | polygalacturonase [Zea mays] |
| RefSeq | NP_001150912.1 | 0 | 20 | 542 | 20 | 536 | polygalacturonase [Zea mays] |
| RefSeq | XP_002456022.1 | 0 | 1 | 542 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-24 | 237 | 440 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-18 | 204 | 492 | 45 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 204 | 492 | 45 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 204 | 492 | 45 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 204 | 492 | 45 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
