| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G044394_T01 |
| Family | GT34 |
| Protein Properties | Length: 1068 Molecular Weight: 117472 Isoelectric Point: 8.8343 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5449412 End: 5453701 |
| Description | Galactosyl transferase GMA12/MNN10 family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT34 | 719 | 962 | 0 |
| PRVLLVTASPQGPCGSPDGDRFLLRATKNRLDYCRLHGVEMVHTTARLEDPELRSPGDGWAKLALLRRLMLSHPEVEWLWWLDAGALVTDMGFELPLARY EGAHLVVRGDSYQLFQRRAWDAASTASFLLRNCQWALDLLDAWAVMAPRGRARHDAGALLTATLAGRPAGEADDQSALVHLLITEKERWMDRVYLENQYY LHGVWTALVGKYEKAMEKHHPGYGDDRWPFVTNFAGCNPCDDGK | |||
| Full Sequence |
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| Protein Sequence Length: 1068 Download |
| MAGADTSGSD VLATVARIDR RLAREKDNDV VVELIRELQA VDMTYEVLEA TKIGHTVNAL 60 RKSAPTALAR LLADTLYRQW KVLANEWITI STTQQQQPSP PPNTDTDSNK RSSSSPPPKA 120 VDDKATNKPS SSPRPASPVD AEQSARPEPD HEKSAPTTIS AAPVRKNILR FRMVTVKEPG 180 KLDRCRLMII PSEAPDPAPA SNYATQNGGD NRQQAYCTAT TSHQATNADN KGVYPSDNVP 240 LTRTVKSPTA LPNPVASTGT CNKRKGEPST NFDEEKLAKA RVRHHEGYKA ASVAKEKRKT 300 KVVNVKELEK PDQHRLTIIP LEASDLAPAS NDATQNGGDS RQQAYCAATA SHQTTNADNK 360 DVYPTDDSPL TMVVKPPTAL VNHVASSGAC KKHKGKAPAD FDEERPAKTR VRLHEGYKEA 420 SVANEKRKTK HVNIQESGKP DQRRLTIISS EAPDPAPASN DATQNGGDST QQAYCAATAS 480 HQTTNAGNKG VCPTDDSPLT MAVKPPTASA NPVASPGACK KHKSEAPTDF DEERLAKAMA 540 RPALHNVARG FVYTQWDSRT NEPGRQSVGL VNEPGRQCRI SQRAEQITDH PLLCAFVTLL 600 VLRGTVGVNR RLVYIAGSPD NRADPATATG SARPVEDVER ILREIRADSD DDPDAGPNND 660 EAPTSTSSSA ATGDHYDRGA AWTTTTYRLQ PRVTRWNAKR RRWLHQNPGF PSRDARGGPR 720 VLLVTASPQG PCGSPDGDRF LLRATKNRLD YCRLHGVEMV HTTARLEDPE LRSPGDGWAK 780 LALLRRLMLS HPEVEWLWWL DAGALVTDMG FELPLARYEG AHLVVRGDSY QLFQRRAWDA 840 ASTASFLLRN CQWALDLLDA WAVMAPRGRA RHDAGALLTA TLAGRPAGEA DDQSALVHLL 900 ITEKERWMDR VYLENQYYLH GVWTALVGKY EKAMEKHHPG YGDDRWPFVT NFAGCNPCDD 960 GKNRSDEYPL DRCASGMERA FNFADNQVLR LYGFRHESLA STEVRRVANR STDPLEAKEE 1020 ALAFLKKPNE PDLWSNDVRK NRKRKGKGDL DSVLARILRR LGWRSQC* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00183 | TFIIS_I | 1.0e-8 | 10 | 81 | 72 | + N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme | ||
| pfam08711 | Med26 | 5.0e-10 | 33 | 81 | 49 | + TFIIS helical bundle-like domain. Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5. | ||
| pfam05637 | Glyco_transf_34 | 7.0e-52 | 719 | 960 | 268 | + galactosyl transferase GMA12/MNN10 family. This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of C. elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34. | ||
| PLN03181 | PLN03181 | 8.0e-94 | 685 | 1002 | 352 | + glycosyltransferase; Provisional | ||
| PLN03182 | PLN03182 | 0 | 617 | 1029 | 413 | + xyloglucan 6-xylosyltransferase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
| GO:0016021 | integral to membrane |
| GO:0016758 | transferase activity, transferring hexosyl groups |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY82266.1 | 0 | 575 | 1022 | 18 | 455 | hypothetical protein OsI_37474 [Oryza sativa Indica Group] |
| RefSeq | NP_001066160.1 | 0 | 564 | 1022 | 7 | 455 | Os12g0149300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001105849.1 | 0 | 592 | 1019 | 55 | 466 | putative glycosyltransferase [Zea mays] |
| RefSeq | XP_002441834.1 | 0 | 579 | 1067 | 25 | 515 | hypothetical protein SORBIDRAFT_08g003080 [Sorghum bicolor] |
| RefSeq | XP_002442801.1 | 0 | 592 | 1022 | 30 | 456 | hypothetical protein SORBIDRAFT_08g003090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wjt_A | 0.002 | 12 | 99 | 14 | 101 | A Chain A, Solution Structure Of The N-Terminal Domain I Of Mouse Transcription Elongation Factor S-Ii Protein 3 |
| Hydropathy |
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