| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G047414_T01 |
| Family | GH28 |
| Protein Properties | Length: 496 Molecular Weight: 54114.6 Isoelectric Point: 9.1494 |
| Chromosome | Chromosome/Scaffold: 4 Start: 176647392 End: 176650969 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 108 | 455 | 0 |
| ERGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAEILGITDEKYWPLMPALPSYGYGRERKGPRFGSLIHGQNLRDVVITGHNGSINGQGEVWWMKHRRRI LNNTRPPLVQLMWSKDIIVANITLRNSPFWHLHPYDCTNVTVSNVTIMSPVSGAPNTDGIDPDSCQDVLIENCYISVGDDAIAIKSGWDQYGIAYGRPSS DILIRNVTARSLVSAGISIGSEMSGGVANVTVENVRIWESRRGVRIKTATGRGGYIRNISYRNITFDNVRAGIVIKVDYNEHADDGYDRTAFPDITSISF KGIHGQGVRVPVRAHGSDVIPIKDISFQDMSVGISYKKKHIFQCSYLE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MVDTGGGRLY QRRGAVAFVA ANKALLAAAW VVGFALVFLW QSASMSFGSA GGGGYLRLLS 60 VPPPPPRPAP RLRPTAYNIT DFGAVGDGRA VNTAAFERAV EAIAALAERG GGQLNVPPGR 120 WLTAPFNLTS HMTLFLAEGA EILGITDEKY WPLMPALPSY GYGRERKGPR FGSLIHGQNL 180 RDVVITGHNG SINGQGEVWW MKHRRRILNN TRPPLVQLMW SKDIIVANIT LRNSPFWHLH 240 PYDCTNVTVS NVTIMSPVSG APNTDGIDPD SCQDVLIENC YISVGDDAIA IKSGWDQYGI 300 AYGRPSSDIL IRNVTARSLV SAGISIGSEM SGGVANVTVE NVRIWESRRG VRIKTATGRG 360 GYIRNISYRN ITFDNVRAGI VIKVDYNEHA DDGYDRTAFP DITSISFKGI HGQGVRVPVR 420 AHGSDVIPIK DISFQDMSVG ISYKKKHIFQ CSYLEGRVIR PVFPKPCENL DVYDEQGQLV 480 KRAVALNSTE LDYDI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-26 | 79 | 467 | 403 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-27 | 187 | 386 | 209 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-32 | 76 | 439 | 375 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-39 | 175 | 439 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-61 | 75 | 429 | 393 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY87758.1 | 0 | 1 | 483 | 1 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
| RefSeq | NP_001140630.1 | 0 | 1 | 495 | 1 | 495 | hypothetical protein LOC100272705 [Zea mays] |
| RefSeq | XP_002324728.1 | 0 | 8 | 495 | 17 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 8 | 495 | 17 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002452925.1 | 0 | 1 | 495 | 1 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-24 | 121 | 441 | 52 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
