| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G048375_T04 |
| Family | GH10 |
| Protein Properties | Length: 556 Molecular Weight: 60278.8 Isoelectric Point: 5.453 |
| Chromosome | Chromosome/Scaffold: 9 Start: 147979831 End: 147982402 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH10 | 205 | 467 | 0 |
| RTNFPLGAAVSRYILTNSAYQTWFASRFAVATFENEMKWYSTEPAPGQEDYTVPDAMMAFAKSNGIAVRGHNVFWDQPSQQPRWVQSLPYPQLLAAASRR IRSVVSRYAGQVIGWDVVNENLHFNFYEGRFGWDASTAFYAAARLLDAGSALMFMNEFNTVEQPGDMAALPARYLQRLQQIIAAYPENGAGMAIGLEGHF TTNPNIPYMRAALDTLAQAGIPVWLTEVDVAPGPSQAQHLEEVLREAYAHPAVQGIVIWSAWR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 556 Download |
| MVLIPIVDRR PPGPLCLPEP LEPQYGGGVL RNADFSAGLR GWSAFGYGSI AESTSAAGNG 60 FAVALNRTRP YQSVSQKVYL QADTHYTLSA WLQVSDGGAD VRAVVKTVGD FVHAGGGVAK 120 AGCWSMLKGG LTAASSGPAE LYFESNATVD LWVDSVSLKP FSKDEWTAHR AESVSAARKK 180 AVRLQATDSA GNPLEGAAVS LDAVRTNFPL GAAVSRYILT NSAYQTWFAS RFAVATFENE 240 MKWYSTEPAP GQEDYTVPDA MMAFAKSNGI AVRGHNVFWD QPSQQPRWVQ SLPYPQLLAA 300 ASRRIRSVVS RYAGQVIGWD VVNENLHFNF YEGRFGWDAS TAFYAAARLL DAGSALMFMN 360 EFNTVEQPGD MAALPARYLQ RLQQIIAAYP ENGAGMAIGL EGHFTTNPNI PYMRAALDTL 420 AQAGIPVWLT EVDVAPGPSQ AQHLEEVLRE AYAHPAVQGI VIWSAWRPEG CYVMCLTDNS 480 FNNLPQGDVV DRLIAEWRAT PRAGSTDAQG YFEAELVHGE YKVTVSHPAL NSSISRSVKV 540 ELGSGSDHYF IDMQV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-5 | 27 | 145 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-25 | 203 | 463 | 285 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-41 | 200 | 482 | 311 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-63 | 241 | 490 | 275 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94504.1 | 0 | 16 | 553 | 31 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACG36704.1 | 0 | 16 | 555 | 37 | 576 | 1,4-beta-xylanase [Zea mays] |
| GenBank | ACL53134.1 | 0 | 1 | 555 | 1 | 555 | unknown [Zea mays] |
| RefSeq | NP_001130600.1 | 0 | 16 | 555 | 56 | 595 | hypothetical protein LOC100191699 [Zea mays] |
| RefSeq | XP_002468320.1 | 0 | 6 | 555 | 25 | 573 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-29 | 210 | 490 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 2e-23 | 210 | 480 | 16 | 288 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 2e-23 | 210 | 480 | 16 | 288 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 2e-23 | 210 | 480 | 16 | 288 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 2e-23 | 210 | 480 | 16 | 288 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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