| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G052844_T02 |
| Family | GH28 |
| Protein Properties | Length: 447 Molecular Weight: 47233.2 Isoelectric Point: 7.3938 |
| Chromosome | Chromosome/Scaffold: 8 Start: 144536723 End: 144540308 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 76 | 418 | 0 |
| PGGAELYVPPGVWLTGPFNLTSRMTLFLARGAVIRATQDTSSWPLIEPLPSYGRGRELPGGRYTSLIHGNGLQDVVITGENGTIDGQGSAWWDMWKNRTL LYTRPHLLELMSSSDIIVSNVVFQDSPFWNIHPVYCSNVVIRNVTILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRASSGI TVRRITGSSPFAGFAVGSETSGGVENVLAEHLNFFNSGFGIHVKTNTGRGGFIRNITVSDVTLDNVRYGLRIVGDVGNHPDDSYNRSALPIVDALTVKNV QGQNVREAGLIKGIPNSAFSRICLSNVKFTGGAPVRPWKCEAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MARRCPCRLL LAVAAAAVLV AAAAQAQETC SGTVPAPPRR GARVSVASFG GAGDGRTLNT 60 AAFARAVASI ERRAAPGGAE LYVPPGVWLT GPFNLTSRMT LFLARGAVIR ATQDTSSWPL 120 IEPLPSYGRG RELPGGRYTS LIHGNGLQDV VITGENGTID GQGSAWWDMW KNRTLLYTRP 180 HLLELMSSSD IIVSNVVFQD SPFWNIHPVY CSNVVIRNVT ILAPHDSPNT DGIDPDSSSN 240 ICIEDCYIST GDDSIAIKSG WDEYGIAYGR ASSGITVRRI TGSSPFAGFA VGSETSGGVE 300 NVLAEHLNFF NSGFGIHVKT NTGRGGFIRN ITVSDVTLDN VRYGLRIVGD VGNHPDDSYN 360 RSALPIVDAL TVKNVQGQNV REAGLIKGIP NSAFSRICLS NVKFTGGAPV RPWKCEAVSG 420 GALDVQPSPC TELTSTSGTS FCTNSL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-26 | 34 | 407 | 391 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 7.0e-27 | 41 | 342 | 317 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 5.0e-31 | 44 | 341 | 308 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-37 | 142 | 422 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-62 | 44 | 412 | 393 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY74990.1 | 0 | 28 | 446 | 26 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
| GenBank | EAY99223.1 | 0 | 27 | 444 | 34 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 27 | 444 | 34 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141464.1 | 0 | 1 | 446 | 1 | 446 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002455965.1 | 0 | 1 | 446 | 1 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 18 | 406 | 2 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 18 | 406 | 2 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 18 | 406 | 2 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 18 | 406 | 2 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-20 | 87 | 341 | 51 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
