| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G054410_T01 |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 47017.9 Isoelectric Point: 8.9101 |
| Chromosome | Chromosome/Scaffold: 3 Start: 12133122 End: 12135275 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 93 | 422 | 0 |
| AWKAACSDEARPVVVVPGGRTFLLSQVTFQGPCKSPITIQLDGRIVAPNRIWTTQPANLLVFHGVDSLTLDGNGEIDGRGAIWWDCYNHKRCNARPILLA FSFCDHLRVTRIRLTNSADKHMTLFRCSQALVDGVSIAAPPDSPNTDGITVASSNHTVISNCSIRSGDDCVSILSQTRNVTVTRSTCGPGHGISVGSLGR SESAVVEQIVVTNCSFVGTMNGVRIKSWQGGKGYAKGFLFAGLNMTGVQYPIVIDQFYCPQGNCPVKPGGVAITDARFIDIQGTSSRQEAIRLLCSQSVH CHGIYLSNVNLSWVNHTAPSNATILNAHGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MAIIVSSSAR STLFILSSIT NHVYRRQVVS ALKTTAAAAR RHTAFAMLLA FVTLLLVLAT 60 RPAQCHQQSY DVVRNFHAAA DGKTDDAKAF LAAWKAACSD EARPVVVVPG GRTFLLSQVT 120 FQGPCKSPIT IQLDGRIVAP NRIWTTQPAN LLVFHGVDSL TLDGNGEIDG RGAIWWDCYN 180 HKRCNARPIL LAFSFCDHLR VTRIRLTNSA DKHMTLFRCS QALVDGVSIA APPDSPNTDG 240 ITVASSNHTV ISNCSIRSGD DCVSILSQTR NVTVTRSTCG PGHGISVGSL GRSESAVVEQ 300 IVVTNCSFVG TMNGVRIKSW QGGKGYAKGF LFAGLNMTGV QYPIVIDQFY CPQGNCPVKP 360 GGVAITDARF IDIQGTSSRQ EAIRLLCSQS VHCHGIYLSN VNLSWVNHTA PSNATILNAH 420 GTTEGVVVPK IQFLQPL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-71 | 98 | 430 | 341 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-73 | 98 | 435 | 346 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-75 | 106 | 411 | 312 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-82 | 98 | 429 | 346 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-84 | 98 | 404 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD68111.1 | 0 | 51 | 433 | 74 | 456 | putative polygalacturonase [Oryza sativa Japonica Group] |
| EMBL | CBI36306.1 | 0 | 73 | 421 | 126 | 481 | unnamed protein product [Vitis vinifera] |
| GenBank | EEE53960.1 | 0 | 51 | 321 | 121 | 391 | hypothetical protein OsJ_00563 [Oryza sativa Japonica Group] |
| RefSeq | XP_002267182.1 | 0 | 48 | 434 | 7 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002457261.1 | 0 | 25 | 437 | 9 | 411 | hypothetical protein SORBIDRAFT_03g004360 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-26 | 84 | 389 | 6 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-26 | 84 | 389 | 6 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-26 | 84 | 389 | 6 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-26 | 84 | 389 | 6 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-26 | 84 | 389 | 6 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
