| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G055101_T01 |
| Family | CBM22 |
| Protein Properties | Length: 581 Molecular Weight: 64540.6 Isoelectric Point: 6.7348 |
| Chromosome | Chromosome/Scaffold: 1 Start: 22639252 End: 22643698 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 56 | 172 | 1.4e-21 |
| ILRNANFSAGLQGWSAFGYGAVEEGLSATGNGYGVARNRTRPYQSVSQKVYLQNDTHYTLSAWLQVSNGSADVRAVVKTDGEFIHAGAVEARSGCWSILK GGLTAPASGAAELYFES | |||
| GH10 | 232 | 493 | 0 |
| RSGFPLGSAMSAEILQSPAYQRWFTSRFTVTTFENEMKWYSTERVQGREDYSVPDAMLRFAKSHGIAVRGHNVFWDQPSQQPAWVRSLSQRQLQQATARR IRSVMSRYAGQVIAWDVVNENLHFQFFEDKFGWDASAEFYRRAHQMDGQALMSMNEYNTLEWPGDTLAGPSKYLGKLFQIKKFPGNANDARMAIGLEGHF SVPSIPYIRAALDTMSKANAPIWLTEIDVAPGPNQAHYLEQILREVYAHPAVHGIILWTARH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 581 Download |
| MEERGVPAMG RTLFLPLLWI AMLTSAARVV QCLPYDYSSS SECLPEPLEP QYGGGILRNA 60 NFSAGLQGWS AFGYGAVEEG LSATGNGYGV ARNRTRPYQS VSQKVYLQND THYTLSAWLQ 120 VSNGSADVRA VVKTDGEFIH AGAVEARSGC WSILKGGLTA PASGAAELYF ESNATVDIWV 180 DSVSLQPFSR EEWAAHHHAA IKSARKKTVR LRARDSAGKP VPGAQVRVEH VRSGFPLGSA 240 MSAEILQSPA YQRWFTSRFT VTTFENEMKW YSTERVQGRE DYSVPDAMLR FAKSHGIAVR 300 GHNVFWDQPS QQPAWVRSLS QRQLQQATAR RIRSVMSRYA GQVIAWDVVN ENLHFQFFED 360 KFGWDASAEF YRRAHQMDGQ ALMSMNEYNT LEWPGDTLAG PSKYLGKLFQ IKKFPGNAND 420 ARMAIGLEGH FSVPSIPYIR AALDTMSKAN APIWLTEIDV APGPNQAHYL EQILREVYAH 480 PAVHGIILWT ARHPQGCYVM CLTDDNFRNL PTGDVVDKLI AEWKTHSLAG VADADGYYEA 540 ELFHGDYKVT VSHPVANSTV VQSLSIDRET DTDSEYTIHV * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-7 | 54 | 172 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-26 | 259 | 489 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-45 | 235 | 489 | 277 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 7.0e-74 | 268 | 516 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 25 | 580 | 24 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31540.1 | 0 | 31 | 580 | 26 | 575 | unknown [Zea mays] |
| GenBank | EEE58525.1 | 0 | 25 | 580 | 24 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 29 | 466 | 561 | 986 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 1 | 580 | 1 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-25 | 237 | 489 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyf_B | 1e-22 | 232 | 492 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1xyf_A | 1e-22 | 232 | 492 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_B | 1e-22 | 232 | 492 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_A | 1e-22 | 232 | 492 | 11 | 269 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
