| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G057296_T01 |
| Family | GH28 |
| Protein Properties | Length: 491 Molecular Weight: 52573.3 Isoelectric Point: 6.5759 |
| Chromosome | Chromosome/Scaffold: 7 Start: 24405653 End: 24409093 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 83 | 420 | 0 |
| AKKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVILGSPDSSDWPVIDALPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTVDGQGAVWWDWFHNH TLNYTRPPLVELMYSTRVVISNLTFINSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYVRNGDDIIVIKSGWDEYGISFAHPSS NISIRNITGQTRNSAGLAFGSEMSGGISDVRAEGVRIVNSVHGIRIKTAPGRGGYVKNVYVADVSFDNVSIAIRITGNYGEHPDDGYDRNALPTISNITI KDVVGVNIGVAGMLQGIPGDSFSGICLSNVSLSVRSTD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MLNCSRKMGR SASVLQVLLV SATIVVAQTQ WASGVWGMYC EDLTASVERP HRASVTDFGA 60 VGDGATLNTK AFQNALFHLD SFAKKGGAQL FVPAGRWLTG SFSLISHLTL SLDKDAVILG 120 SPDSSDWPVI DALPSYGRGR ELPGKRHQSL IFGSNLTDVI ITGANGTVDG QGAVWWDWFH 180 NHTLNYTRPP LVELMYSTRV VISNLTFINS PFWNIHPVYC SQVLVQHLTI LAPISSPNTD 240 GIDPDSSTNV CIEDCYVRNG DDIIVIKSGW DEYGISFAHP SSNISIRNIT GQTRNSAGLA 300 FGSEMSGGIS DVRAEGVRIV NSVHGIRIKT APGRGGYVKN VYVADVSFDN VSIAIRITGN 360 YGEHPDDGYD RNALPTISNI TIKDVVGVNI GVAGMLQGIP GDSFSGICLS NVSLSVRSTD 420 PWNCSLVEGY SSSVSPEVCE QLRATPGPGS GQMCYGGNYP AAAAQPQPPQ KSGASRLVSP 480 FLSISWFLRR * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-24 | 45 | 389 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-26 | 50 | 361 | 336 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-28 | 55 | 389 | 347 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-31 | 151 | 425 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-55 | 53 | 365 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR35653.1 | 0 | 1 | 490 | 1 | 490 | unknown [Zea mays] |
| GenBank | EEC81792.1 | 0 | 6 | 484 | 28 | 501 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
| GenBank | EEE66877.1 | 0 | 6 | 484 | 28 | 501 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059282.1 | 0 | 8 | 484 | 2 | 441 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459610.1 | 0 | 1 | 490 | 1 | 499 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.00141e-43 | 41 | 411 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.00141e-43 | 41 | 411 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.00141e-43 | 41 | 411 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.00141e-43 | 41 | 411 | 12 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-19 | 69 | 419 | 26 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
