| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G058033_T01 |
| Family | GH28 |
| Protein Properties | Length: 322 Molecular Weight: 34429.2 Isoelectric Point: 6.749 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99272413 End: 99273843 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 93 | 310 | 0 |
| PNFFHMNMYRRKDMLIKDVTVMAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDST LKKKIFDVRIKAYEDATSVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITDTSSTPEAVSLLCTAKIPCTGVTMDDVNVE YSGTNNKTMAICTNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 322 Download |
| MAYTDNAMRA LFLLALFCVV HGEKEESKGI DAKASGPGGS FEITKLGASG NGPSRVEQEL 60 LHQEVRLQDP SQLAGDGLRE QWGRCPGSRC STPNFFHMNM YRRKDMLIKD VTVMAPGDSP 120 NTDGIHMGDS SGITITNTVI GVGDDCISIG PGTSKVNITG VTCGPGHGIS IGSLGRYKDE 180 KDVTDINVKD STLKKKIFDV RIKAYEDATS VLTVSKIHYE NIKMEDSANP IFIDMKYCPN 240 KLCTANGASK VTVKDVTFKN ITDTSSTPEA VSLLCTAKIP CTGVTMDDVN VEYSGTNNKT 300 MAICTNAKGS TKGCLKDLAC F* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-49 | 108 | 313 | 206 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-50 | 97 | 321 | 225 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 5.0e-51 | 106 | 321 | 216 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-72 | 93 | 313 | 221 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-83 | 95 | 308 | 214 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PIR | 0 | 70 | 321 | 114 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| EMBL | CAA40910.1 | 1e-19 | 5 | 54 | 1 | 50 | polygalacturonase [Zea mays] |
| EMBL | CAA40910.1 | 0 | 70 | 321 | 157 | 406 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 3e-21 | 1 | 54 | 1 | 54 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 70 | 321 | 161 | 410 | exopolygalacturonase precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.00000000000008 | 102 | 306 | 155 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.00000000000008 | 102 | 306 | 155 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.0000000000002 | 121 | 299 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 121 | 299 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 121 | 299 | 152 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
