| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079263_T03 |
| Family | GH28 |
| Protein Properties | Length: 408 Molecular Weight: 43123.2 Isoelectric Point: 7.6325 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162013145 End: 162015714 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 392 | 0 |
| AAACSSTQEAVLAVPAGKVYQIWPVQLSGPCKKRLKLLISGAIVAPSSPDEWAGRDPMKWLYVYGVDGLSVSGGGTIDGMGQQWWASTCKRKKTQPCYSG PRPKAVHFEECREVSVQGVTLQNAQQFQLTFTRCSCVKASFLRVVAPADSPNTDGIHLNDTSHVRITDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGI SIGSLGKNRTTDMVEDVKVDTCLLTNTTNGVRIKSWQGGTGFARDLRFENIVMRNVSNPIIIDQYYCDQPTPCANQTQAVEVRRVEFAGIRGTSATPQAI SIACSDAVPCRDLELANVNLTLEGGGAGRATALCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 408 Download |
| MAKAVPSPLA AVAVLALLLL CRGAEARVLL TLDDFGGVGD GIANDTQALL DAWAAACSST 60 QEAVLAVPAG KVYQIWPVQL SGPCKKRLKL LISGAIVAPS SPDEWAGRDP MKWLYVYGVD 120 GLSVSGGGTI DGMGQQWWAS TCKRKKTQPC YSGPRPKAVH FEECREVSVQ GVTLQNAQQF 180 QLTFTRCSCV KASFLRVVAP ADSPNTDGIH LNDTSHVRIT DNLISTGDDC VSMVGNCSDV 240 RVKDISCGPG HGISIGSLGK NRTTDMVEDV KVDTCLLTNT TNGVRIKSWQ GGTGFARDLR 300 FENIVMRNVS NPIIIDQYYC DQPTPCANQT QAVEVRRVEF AGIRGTSATP QAISIACSDA 360 VPCRDLELAN VNLTLEGGGA GRATALCYRA SGKSAGTVVP PSCLARS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-88 | 35 | 407 | 375 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-89 | 35 | 403 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-92 | 57 | 387 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-107 | 25 | 400 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-155 | 29 | 407 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 25 | 407 | 29 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 1 | 407 | 1 | 407 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 1 | 407 | 1 | 382 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 25 | 407 | 29 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 21 | 407 | 21 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-22 | 124 | 319 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-18 | 122 | 374 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-18 | 122 | 374 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-18 | 122 | 374 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-18 | 122 | 374 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
