| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079263_T05 |
| Family | GH28 |
| Protein Properties | Length: 176 Molecular Weight: 18481 Isoelectric Point: 7.9109 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162013145 End: 162015714 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 4 | 160 | 0 |
| NCSDVRVKDISCGPGHGISIGSLGKNRTTDMVEDVKVDTCLLTNTTNGVRIKSWQGGTGFARDLRFENIVMRNVSNPIIIDQYYCDQPTPCANQTQAVEV RRVEFAGIRGTSATPQAISIACSDAVPCRDLELANVNLTLEGGGAGRATALCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 176 Download |
| MVGNCSDVRV KDISCGPGHG ISIGSLGKNR TTDMVEDVKV DTCLLTNTTN GVRIKSWQGG 60 TGFARDLRFE NIVMRNVSNP IIIDQYYCDQ PTPCANQTQA VEVRRVEFAG IRGTSATPQA 120 ISIACSDAVP CRDLELANVN LTLEGGGAGR ATALCYRASG KSAGTVVPPS CLARS* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-42 | 3 | 171 | 171 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-42 | 7 | 168 | 162 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-44 | 10 | 174 | 166 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-48 | 6 | 155 | 150 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-69 | 1 | 175 | 175 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 1 | 175 | 237 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 1 | 175 | 233 | 407 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 1 | 175 | 208 | 382 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 1 | 175 | 237 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 1 | 175 | 235 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.000000000007 | 14 | 153 | 218 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000007 | 14 | 153 | 218 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.00000000003 | 6 | 156 | 197 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 0.00000000005 | 16 | 87 | 248 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000002 | 14 | 142 | 193 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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