| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079617_T01 |
| Family | GH28 |
| Protein Properties | Length: 487 Molecular Weight: 51664.9 Isoelectric Point: 5.2715 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162018937 End: 162021232 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 54 | 449 | 0 |
| TAACAAADDVILNVPAGGTFRIWPLTLAGPCRSEIKLLISGDIVAPESPQDWGQGQSDQWLHFHKVRDLTVTGGGIIDGRGQQWWAQSLARAQPAPKAVH FEDCQGISVKGITLQNSQSYHLTFTRSSDVEANYLRVTSPEHSVDTKGIHLVDSYNVHVMDNLISTGSADEFGFQKTISQQCDDCVSIVGNCTDVRLRAI SCGPGHGISIGTLGVNSSVDYVEKIKVDTLFISNAENGVRVRTTENGGGGGFARKVKFESIVMRNVTNPIIVDQGISSDDPPPSSPEAVALVHHTLIRLP SLSAFTPRDAAAYISVRQAVSLNSRAGKFCAAQAATASAAVQVEKINYIDITGTSASERAVTFSCSDARPCRRLSLDNVNLTQVDGSEASSYCRQA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 487 Download |
| MMARGAVLLL LAAAFAAALL PDAAESRILL TLHDFGAVGD GVADDTKALA GAWTAACAAA 60 DDVILNVPAG GTFRIWPLTL AGPCRSEIKL LISGDIVAPE SPQDWGQGQS DQWLHFHKVR 120 DLTVTGGGII DGRGQQWWAQ SLARAQPAPK AVHFEDCQGI SVKGITLQNS QSYHLTFTRS 180 SDVEANYLRV TSPEHSVDTK GIHLVDSYNV HVMDNLISTG SADEFGFQKT ISQQCDDCVS 240 IVGNCTDVRL RAISCGPGHG ISIGTLGVNS SVDYVEKIKV DTLFISNAEN GVRVRTTENG 300 GGGGFARKVK FESIVMRNVT NPIIVDQGIS SDDPPPSSPE AVALVHHTLI RLPSLSAFTP 360 RDAAAYISVR QAVSLNSRAG KFCAAQAATA SAAVQVEKIN YIDITGTSAS ERAVTFSCSD 420 ARPCRRLSLD NVNLTQVDGS EASSYCRQAF GRSVGTVVPE SCLSKEDFVH HVPPQRSEED 480 GEDSES* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-6 | 394 | 446 | 53 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-16 | 394 | 464 | 71 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-50 | 63 | 327 | 272 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-52 | 65 | 328 | 267 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-76 | 67 | 327 | 266 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY98883.1 | 0 | 22 | 469 | 22 | 414 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
| GenBank | EEE64554.1 | 0 | 22 | 485 | 28 | 444 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056199.1 | 0 | 22 | 485 | 28 | 444 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151374.1 | 0 | 25 | 486 | 24 | 429 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440168.1 | 0 | 2 | 486 | 1 | 423 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000000000001 | 124 | 326 | 113 | 311 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000003 | 120 | 349 | 68 | 285 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000003 | 120 | 349 | 68 | 285 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000003 | 120 | 349 | 68 | 285 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000003 | 120 | 349 | 68 | 285 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
