| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G079617_T02 |
| Family | GH28 |
| Protein Properties | Length: 430 Molecular Weight: 45486.9 Isoelectric Point: 4.7825 |
| Chromosome | Chromosome/Scaffold: 6 Start: 162018937 End: 162021460 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 392 | 0 |
| TAACAAADDVILNVPAGGTFRIWPLTLAGPCRSEIKLLISGDIVAPESPQDWGQGQSDQWLHFHKVRDLTVTGGGIIDGRGQQWWAQSLARAQPAPKAVH FEDCQGISVKGITLQNSQSYHLTFTRSSDVEANYLRVTSPEHSVDTKGIHLVDSYNVHVMDNLISTGDDCVSIVGNCTDVRLRAISCGPGHGISIGTLGV NSSVDYVEKIKVDTLFISNAENGVRVRTTENGGGGGFARKVKFESIVMRNVTNPIIVDQGISSDDPPPSSPEAVALAATASAAVQVEKINYIDITGTSAS ERAVTFSCSDARPCRRLSLDNVNLTQVDGSEASSYCRQA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 430 Download |
| MMARGAVLLL LAAAFAAALL PDAAESRILL TLHDFGAVGD GVADDTKALA GAWTAACAAA 60 DDVILNVPAG GTFRIWPLTL AGPCRSEIKL LISGDIVAPE SPQDWGQGQS DQWLHFHKVR 120 DLTVTGGGII DGRGQQWWAQ SLARAQPAPK AVHFEDCQGI SVKGITLQNS QSYHLTFTRS 180 SDVEANYLRV TSPEHSVDTK GIHLVDSYNV HVMDNLISTG DDCVSIVGNC TDVRLRAISC 240 GPGHGISIGT LGVNSSVDYV EKIKVDTLFI SNAENGVRVR TTENGGGGGF ARKVKFESIV 300 MRNVTNPIIV DQGISSDDPP PSSPEAVALA ATASAAVQVE KINYIDITGT SASERAVTFS 360 CSDARPCRRL SLDNVNLTQV DGSEASSYCR QAFGRSVGTV VPESCLSKED FVHHVPPQRS 420 EEDGEDSES* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-58 | 65 | 406 | 343 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-59 | 71 | 405 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-65 | 65 | 389 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-66 | 63 | 403 | 348 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-103 | 67 | 407 | 346 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY98883.1 | 0 | 22 | 412 | 22 | 414 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
| GenBank | EEE64554.1 | 0 | 22 | 428 | 28 | 444 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056199.1 | 0 | 22 | 428 | 28 | 444 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151374.1 | 0 | 25 | 429 | 24 | 429 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440168.1 | 0 | 2 | 429 | 1 | 423 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-17 | 124 | 378 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 0.000000000000003 | 65 | 391 | 53 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000000003 | 65 | 391 | 53 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.00000000000009 | 120 | 391 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000009 | 120 | 391 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
