| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G080056_T01 |
| Family | PL1 |
| Protein Properties | Length: 445 Molecular Weight: 49343.1 Isoelectric Point: 9.582 |
| Chromosome | Chromosome/Scaffold: 4 Start: 230884015 End: 230886011 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 167 | 365 | 0 |
| IIFARSMIIQLSQELLMSSDKTIDGRGAQVHIANGAGITVQLAQNVIIHNLHVHDVKHTMGGLMRDSPTHIGSRTRADGDGISLFSATNVWIDHISMSNC EDGLIDVVQSSTGITISNCHFTNHNDVMLFGASDSWPQDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGGDAPTIISQGNRYIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| METTTKLRWS RPGSFLLVAA AFLASAAASG VNVGQFDDHL QKRKELAEAS AREAYRPDPY 60 NVTNSFNAAV HRAVSSSRRE MRERPRKHKK RGPCRATNPI DKCWRCRRDW ATDRQRLARC 120 ARGFGHATTG GLGGKIYVVT DPTDLDVVNP RPGTLRWGVI QPGPLWIIFA RSMIIQLSQE 180 LLMSSDKTID GRGAQVHIAN GAGITVQLAQ NVIIHNLHVH DVKHTMGGLM RDSPTHIGSR 240 TRADGDGISL FSATNVWIDH ISMSNCEDGL IDVVQSSTGI TISNCHFTNH NDVMLFGASD 300 SWPQDQIMQI TVAFNHFGRG LVQRMPRCRW GFFHVVNNDY THWLMYAIGG GDAPTIISQG 360 NRYIAPPNIA AKVITKHYAE EGVWKNWVWH TEDDLFMNGA IFNPSGGAPK QVDTNEWVKP 420 KPGTYVTRLT RFSGTLSCCT GKPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.0003 | 184 | 293 | 112 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam04431 | Pec_lyase_N | 2.0e-12 | 32 | 71 | 40 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-32 | 184 | 419 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-67 | 179 | 363 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-75 | 173 | 367 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 1 | 444 | 1 | 444 | unknown [Zea mays] |
| GenBank | EAY85003.1 | 0 | 6 | 444 | 5 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
| RefSeq | NP_001046281.1 | 0 | 6 | 444 | 5 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437204.1 | 0 | 7 | 444 | 6 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 1 | 444 | 1 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 98 | 437 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 98 | 437 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-26 | 126 | 354 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 157 | 406 | 102 | 364 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.0000000000004 | 179 | 363 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
