| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G092746_T01 |
| Family | GH28 |
| Protein Properties | Length: 437 Molecular Weight: 46899.1 Isoelectric Point: 8.6332 |
| Chromosome | Chromosome/Scaffold: 1 Start: 290561946 End: 290563593 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 85 | 420 | 0 |
| WKAACASPRPAVVLVPDGRRYLLKLLTLRGPCKSSVTLTVKGTLVASPNRADWSDNDRRHWIVFRSIDKLTVNGGGAIDGNGEKWWPHSCKINKALPCKE APTALSFHYCVDLKVEDLKIVNSQQIHMSVEDSANALLARLSITAPGTSPNTDGIHITRSKDVRVTDCKIKTGDDCMSIENGTHNLHVSKVNCGPGHGIS IGSLGDDNSRAEVSGITIDSVQLHGTTNGARIKTYQGGSGYAKDITFQNMVMYDVKNPIIIDQNYCDKAKPCGEQESAVQVSGVVFKNIRGTTSTKDAIK MNCSENVPCQGITLQNIDLKMQDGKGNTRSTCQNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 437 Download |
| MKLVYMVTLL PLLFMSGVLE AAGAGNDSSA DGTNGNLHSS GTSRPAAAPR GRSLQASQSS 60 VYSVDRYGAR GDGRNDDTRA LEMAWKAACA SPRPAVVLVP DGRRYLLKLL TLRGPCKSSV 120 TLTVKGTLVA SPNRADWSDN DRRHWIVFRS IDKLTVNGGG AIDGNGEKWW PHSCKINKAL 180 PCKEAPTALS FHYCVDLKVE DLKIVNSQQI HMSVEDSANA LLARLSITAP GTSPNTDGIH 240 ITRSKDVRVT DCKIKTGDDC MSIENGTHNL HVSKVNCGPG HGISIGSLGD DNSRAEVSGI 300 TIDSVQLHGT TNGARIKTYQ GGSGYAKDIT FQNMVMYDVK NPIIIDQNYC DKAKPCGEQE 360 SAVQVSGVVF KNIRGTTSTK DAIKMNCSEN VPCQGITLQN IDLKMQDGKG NTRSTCQNAK 420 WTEFGTVRPQ PCTAIK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-97 | 62 | 418 | 359 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-110 | 46 | 433 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-115 | 89 | 420 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-140 | 44 | 432 | 389 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-145 | 60 | 430 | 373 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 14 | 436 | 27 | 442 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 44 | 435 | 75 | 479 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 22 | 436 | 11 | 436 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 16 | 434 | 15 | 433 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 2 | 434 | 11 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 156 | 403 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 3e-19 | 76 | 398 | 1 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 7e-19 | 154 | 418 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-19 | 154 | 418 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-19 | 154 | 418 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
