| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G098912_T01 |
| Family | GH28 |
| Protein Properties | Length: 767 Molecular Weight: 79726.8 Isoelectric Point: 9.1147 |
| Chromosome | Chromosome/Scaffold: 8 Start: 39468590 End: 39471450 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 390 | 720 | 0 |
| KAACSSNSTTPTLLVPSDGVFTISSTIFAGPCKSAVTFQIDGVLMPPDGPASWPASDSRKQWIVFYKANGMTLAGEGTIEGNGEEWWDLPCKPHRGPNGS TLPGPCDSPALVRFFLSNDVTVRGLRIENSPQFHLKFDDCERVRVDGLFVRSPAFSPNTDGVHVENTTSVQILNSRIYNGDDCVSIGAGCSDVRIENITC GHGHGISIGSLGVHGTRACVSNITVRNARILDSDNGVRIKTWQGGTGAVTAVEFAGVQMQNVKNCILIDQYYCLGSGCANLSSAVRVAGVTYRDIRGTYN PQASAPIRLACSDAVACTDITMSGVELLPAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 767 Download |
| MPPATSTRPP FRRPVPLLTV VVSVALLSLV CFLVAADASR SLHYHYHLRK HRRHHGHHRA 60 ENYSHISLPP AAPPPGADGD SPAGPVGLPP DVGGALPPSS CSDKPCPLSP SPSRAPAGAP 120 CSTPGSAKPP ALTLATPPSP APATPPSHSP PNPPSSHQPF QRPTLPLAKA PPSSKPPSPD 180 IAPFHPHAKP PRALPDAKSP SQPPKRAPAP SPLSPSKPRK PPSCTLATPP QAQTSRLAPA 240 SAKPPMRSPA HPPKLSPASP LAHPPVEPPK SALAKPPGFS FSHTTKPQPP VASMVKPPRL 300 APAKPPAPSP LPAAQPPRCS TANPPVAPTA SAKPPAYPPA AASKPIPPPP LPPAANNSSS 360 AWGNVFDVRA FGASGSGSGN DTRALRAAWK AACSSNSTTP TLLVPSDGVF TISSTIFAGP 420 CKSAVTFQID GVLMPPDGPA SWPASDSRKQ WIVFYKANGM TLAGEGTIEG NGEEWWDLPC 480 KPHRGPNGST LPGPCDSPAL VRFFLSNDVT VRGLRIENSP QFHLKFDDCE RVRVDGLFVR 540 SPAFSPNTDG VHVENTTSVQ ILNSRIYNGD DCVSIGAGCS DVRIENITCG HGHGISIGSL 600 GVHGTRACVS NITVRNARIL DSDNGVRIKT WQGGTGAVTA VEFAGVQMQN VKNCILIDQY 660 YCLGSGCANL SSAVRVAGVT YRDIRGTYNP QASAPIRLAC SDAVACTDIT MSGVELLPAS 720 GGGARALLAD PYCWNAYGVM ETLTLPPVYC LQEGRPESLQ DQLTSC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-61 | 363 | 726 | 366 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-62 | 366 | 724 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-78 | 368 | 724 | 362 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-81 | 395 | 731 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-93 | 365 | 747 | 385 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001132604.2 | 0.0000002 | 17 | 103 | 22 | 96 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | NP_001132604.2 | 0 | 336 | 766 | 69 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 27 | 766 | 1 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 363 | 766 | 114 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-24 | 449 | 716 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-24 | 449 | 716 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-24 | 449 | 716 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-24 | 449 | 716 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-24 | 449 | 716 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
