| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G107073_T01 |
| Family | GH28 |
| Protein Properties | Length: 487 Molecular Weight: 51744.5 Isoelectric Point: 6.7744 |
| Chromosome | Chromosome/Scaffold: 6 Start: 56102468 End: 56105100 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 92 | 439 | 0 |
| GGGGGMLYVPAGKWLTGPFNLTSHFTLYLHQDAVILGSQDVGEWPIVDPLPSYGRGRDKVGGRFASLIGGSNLTDVVITGSNGTIDGQGAMWWSKFHKNQ LKYTRGYLIELMHSDTIYISNLTLLNSPAWNIHPVYSSNIVVQGITILAPTNSPNTDGINPDSCSHVRIEDCYIVSGDDCVAIKSGWDEYGISYGMPSQH IVIRRLTCVSPTSAVIALGSEMSGGIQDVRAEDITAINTESAVRIKTAVGRGAYVRDVFARRMTLTTMKRVFWMTGDYKSHPDDKYDPNAVPVVANISYQ DVVATGVYKEAARLQGIQGAPFRGICVANVTADLSKSRKYPWNCADIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 487 Download |
| MAPRTLGLNA APLLQILRSL CLLALAAAAA VSGRRHGASP ARGSGQSMYL APACRAHTAS 60 VADFGGVGDG TTSNTAAFRS AVDHLSQYSG EGGGGGMLYV PAGKWLTGPF NLTSHFTLYL 120 HQDAVILGSQ DVGEWPIVDP LPSYGRGRDK VGGRFASLIG GSNLTDVVIT GSNGTIDGQG 180 AMWWSKFHKN QLKYTRGYLI ELMHSDTIYI SNLTLLNSPA WNIHPVYSSN IVVQGITILA 240 PTNSPNTDGI NPDSCSHVRI EDCYIVSGDD CVAIKSGWDE YGISYGMPSQ HIVIRRLTCV 300 SPTSAVIALG SEMSGGIQDV RAEDITAINT ESAVRIKTAV GRGAYVRDVF ARRMTLTTMK 360 RVFWMTGDYK SHPDDKYDPN AVPVVANISY QDVVATGVYK EAARLQGIQG APFRGICVAN 420 VTADLSKSRK YPWNCADIEG VSANVSPAPC DPLQGAHDGA CPFPTDTLPI DQVTVQQCAY 480 DIPATN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-21 | 61 | 450 | 419 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-24 | 58 | 421 | 378 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 7.0e-24 | 60 | 444 | 398 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-29 | 159 | 450 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-54 | 59 | 356 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 48 | 486 | 1 | 439 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 9 | 485 | 10 | 484 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 1 | 486 | 1 | 486 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002437680.1 | 0 | 1 | 483 | 1 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 49 | 479 | 43 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.04467e-44 | 51 | 427 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.04467e-44 | 51 | 427 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.04467e-44 | 51 | 427 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.04467e-44 | 51 | 427 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000000001 | 53 | 383 | 151 | 516 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
