| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G111609_T01 |
| Family | GH28 |
| Protein Properties | Length: 442 Molecular Weight: 47298.6 Isoelectric Point: 8.2114 |
| Chromosome | Chromosome/Scaffold: 1 Start: 290589211 End: 290590994 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 88 | 423 | 0 |
| WKAACASPRPAVVLVPAGRRYLLKLLTLRGPCKSSVTLTVKGTLVASPNRADWSDSDRRHWIVFRSIDELTVNGGGAIDGNGEKWWPHSCKINKALPCKE APTALSFHYCVGLKVEDLKIMNSQQIHMSVEDSANVLLARLSITAPGTSPNTDGIHITRSKDVRVTDCKIKTGDDCMSIENGTHNLHVSKVTCGPGHGIS IGSLGDDNSRAEVSGITIDSVQLHGTTNGARIKTYQGGSGYAKDITFQNMVMYDVKNPIIIDQNYCDRAKPCGEQESAVQVSGVVFKNIRGTTSTKDAIK MNCSENVPCQGITLQNIDLEMQDGKGSTRSTCRNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 442 Download |
| MASSSGMKLV YMAPLLPLLF MSGVLEAAGA GSSADGTNGN LHGSVTSRPA AAPRGRSLPE 60 SQSVFSLDRY GARGDGRNDD TRALEMAWKA ACASPRPAVV LVPAGRRYLL KLLTLRGPCK 120 SSVTLTVKGT LVASPNRADW SDSDRRHWIV FRSIDELTVN GGGAIDGNGE KWWPHSCKIN 180 KALPCKEAPT ALSFHYCVGL KVEDLKIMNS QQIHMSVEDS ANVLLARLSI TAPGTSPNTD 240 GIHITRSKDV RVTDCKIKTG DDCMSIENGT HNLHVSKVTC GPGHGISIGS LGDDNSRAEV 300 SGITIDSVQL HGTTNGARIK TYQGGSGYAK DITFQNMVMY DVKNPIIIDQ NYCDRAKPCG 360 EQESAVQVSG VVFKNIRGTT STKDAIKMNC SENVPCQGIT LQNIDLEMQD GKGSTRSTCR 420 NAKWREFGTV HPQPCTATDT E* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-95 | 69 | 421 | 355 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-111 | 17 | 436 | 423 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-118 | 92 | 423 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-144 | 49 | 440 | 392 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-147 | 56 | 433 | 380 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 20 | 437 | 27 | 440 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 48 | 437 | 75 | 478 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 25 | 438 | 10 | 435 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 22 | 437 | 15 | 433 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 8 | 439 | 11 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-23 | 159 | 406 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-20 | 83 | 382 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-20 | 83 | 382 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-20 | 83 | 382 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-20 | 83 | 382 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
