| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G112579_T01 |
| Family | GH28 |
| Protein Properties | Length: 429 Molecular Weight: 44606.5 Isoelectric Point: 6.0368 |
| Chromosome | Chromosome/Scaffold: 3 Start: 84903832 End: 84905743 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 86 | 416 | 0 |
| SACGAMGDATMLIPKGDYLVGPLYFSGPCMGDITIQLDGILLGSNDLAKYTASWIQVSHVNNIVINGSGTLDGQGTAVYTKSKTDVVKAMPNTLVLFYVT NGTVSGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEK DVSDVTVRDCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNSSHVSIKNVTFRNISGTSSTPEAVSLLCSETQ PCSGVSLIDVNVEYAGKNNKTMAVCSNAKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 429 Download |
| MAASTNNTLR VLFTLMVVCA AVCTAKRTVA KAGDLAPAPA PLGAGGATAA PEGAARASRT 60 FDISKFGATS DGKTDSTQAV QDTWTSACGA MGDATMLIPK GDYLVGPLYF SGPCMGDITI 120 QLDGILLGSN DLAKYTASWI QVSHVNNIVI NGSGTLDGQG TAVYTKSKTD VVKAMPNTLV 180 LFYVTNGTVS GIKLLNSKFF HINIDTSKDI TVKDVNITAP ADVENTDGVH VGGSSNVRIT 240 NSTIGTGDDC VSIGPGSDGV MVNNITCGPG QGISVGCLGR YKDEKDVSDV TVRDCVLRNT 300 TNGVRIKSYE DAESVLTASH LTFENIRMEE VANPIIIDQY FCPQKVCPGK RSNSSHVSIK 360 NVTFRNISGT SSTPEAVSLL CSETQPCSGV SLIDVNVEYA GKNNKTMAVC SNAKGTAKGS 420 LQALDCLV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-74 | 58 | 427 | 376 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-83 | 60 | 421 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-84 | 59 | 427 | 380 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-97 | 88 | 417 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-111 | 60 | 414 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG32118.1 | 0 | 3 | 428 | 2 | 415 | exopolygalacturonase precursor [Zea mays] |
| GenBank | ACG34252.1 | 0 | 1 | 428 | 1 | 428 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001130136.1 | 0 | 3 | 428 | 2 | 416 | hypothetical protein LOC100191230 [Zea mays] |
| RefSeq | NP_001141594.1 | 0 | 1 | 428 | 1 | 428 | hypothetical protein LOC100273711 [Zea mays] |
| RefSeq | XP_002455693.1 | 0 | 3 | 427 | 2 | 412 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 7e-19 | 57 | 416 | 17 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 6e-18 | 150 | 379 | 113 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000002 | 134 | 412 | 61 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000002 | 134 | 412 | 61 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000002 | 134 | 412 | 61 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
