| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G113815_T01 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 48952.1 Isoelectric Point: 5.4654 |
| Chromosome | Chromosome/Scaffold: 10 Start: 22363483 End: 22367295 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 71 | 421 | 0 |
| ADKGGAQLYIPRGRWLTGSFNLTSHLTLFLESGAVIVGTQDVSQWPVVEPLPSYGRGMDLPGSRHRSLINGQNLVDVVITGNNGTIDGQGSTWWNWFRSN KLNYSRPHLVEFVDSEQIVISNITFLNSPAWSIHPVYCSNVVVHSVTIQTSLDAPLNHGIVPDSCSNMCIEDSSISVSHDAISLKSGWDKQGIAFGRPTS DIHISRLDLQSSLGAALAFGSEMSGGISDIHADRLLIHSSSRGVFFKTAPGRGGYIRDTVISDVQMEDVDVAIAFTGDWPSHPDDQFDPAALPVVSHITL KNMTGTRISVAGVLSGIAGDPFTDICLSNINFSLADSASPTSHWSCSNVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MARLVALASM VAVLVLGLAC AEAEPQCTRR RPPAPPRPHS VTITEFGAVG DGVTLNTVSF 60 QNAVFYLRSF ADKGGAQLYI PRGRWLTGSF NLTSHLTLFL ESGAVIVGTQ DVSQWPVVEP 120 LPSYGRGMDL PGSRHRSLIN GQNLVDVVIT GNNGTIDGQG STWWNWFRSN KLNYSRPHLV 180 EFVDSEQIVI SNITFLNSPA WSIHPVYCSN VVVHSVTIQT SLDAPLNHGI VPDSCSNMCI 240 EDSSISVSHD AISLKSGWDK QGIAFGRPTS DIHISRLDLQ SSLGAALAFG SEMSGGISDI 300 HADRLLIHSS SRGVFFKTAP GRGGYIRDTV ISDVQMEDVD VAIAFTGDWP SHPDDQFDPA 360 ALPVVSHITL KNMTGTRISV AGVLSGIAGD PFTDICLSNI NFSLADSASP TSHWSCSNVS 420 GYSELVFPEP CLDLQTQSSD ASVCSTLPSF HAAAIAAA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-14 | 39 | 431 | 422 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-18 | 139 | 419 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 5.0e-19 | 39 | 436 | 421 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-19 | 40 | 401 | 373 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 1.0e-44 | 41 | 353 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA99544.2 | 0 | 39 | 456 | 41 | 457 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC68574.1 | 0 | 37 | 455 | 31 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 30 | 456 | 1 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 37 | 455 | 31 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148987.1 | 0 | 1 | 458 | 1 | 458 | polygalacturonase [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-37 | 30 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-37 | 30 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-37 | 30 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-37 | 30 | 399 | 19 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000002 | 85 | 420 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
