| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G119494_T01 |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 49735.5 Isoelectric Point: 6.5889 |
| Chromosome | Chromosome/Scaffold: 1 Start: 5345118 End: 5348832 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 79 | 425 | 0 |
| GAALVVPPGKWLTGPFNLTSCFTLYLDEGAEILASQDMKHWPLIAPLPSYGRGRDEPGPRYSNFIGGSNLTDVIITGKNGTINGQGQVWWDKFHAKELKF TRGHLLELLYSDNIIISNVTFVDAPYWNLHPTYCTNVTISGVTILAPVNSPNTDGIDPDSSSRVKIEDCYIVSGDDCVAVKSGWDEYGIRFNMPSQHIVI RRLTCVSPTSAMIALGSEMSGGIRDVRAEDSVAINTESAVRVKSGAGRGGFVRDIFVRGLSLHTMKWVFWMTGNYGQHPDNTSDPNAMPEVTGINYSDVF AENVTMAGRMEGIPKDPYTGICISNVTARLAPDAKELQWNCTNVKGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MAPGRSLRPA GTAAVLWAAS LLLLATSCAR AGGAYAGPGC RKHVARVTEY GAVGDGRTLN 60 TAAFARAVAD LARRAPDGGA ALVVPPGKWL TGPFNLTSCF TLYLDEGAEI LASQDMKHWP 120 LIAPLPSYGR GRDEPGPRYS NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFTR 180 GHLLELLYSD NIIISNVTFV DAPYWNLHPT YCTNVTISGV TILAPVNSPN TDGIDPDSSS 240 RVKIEDCYIV SGDDCVAVKS GWDEYGIRFN MPSQHIVIRR LTCVSPTSAM IALGSEMSGG 300 IRDVRAEDSV AINTESAVRV KSGAGRGGFV RDIFVRGLSL HTMKWVFWMT GNYGQHPDNT 360 SDPNAMPEVT GINYSDVFAE NVTMAGRMEG IPKDPYTGIC ISNVTARLAP DAKELQWNCT 420 NVKGVTSHVS PKPCPELAAE GKPCAFPEEE LVIGPPELPK CSY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-19 | 42 | 333 | 306 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 7.0e-22 | 47 | 340 | 305 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-27 | 47 | 440 | 406 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-30 | 141 | 333 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-52 | 47 | 347 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001048813.1 | 0 | 19 | 463 | 14 | 458 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 1 | 463 | 1 | 463 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002299511.1 | 0 | 35 | 463 | 43 | 475 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002468601.1 | 0 | 1 | 463 | 1 | 463 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 35 | 462 | 43 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.00141e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.00141e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.00141e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.00141e-43 | 47 | 442 | 30 | 444 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 77 | 380 | 37 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
