| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G119494_T03 |
| Family | GH28 |
| Protein Properties | Length: 206 Molecular Weight: 21847.9 Isoelectric Point: 9.4559 |
| Chromosome | Chromosome/Scaffold: 1 Start: 5345153 End: 5348705 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 79 | 204 | 8.8e-21 |
| GAALVVPPGKWLTGPFNLTSCFTLYLDEGAEILASQDMKHWPLIAPLPSYGRGRDEPGPRYSNFIGGSNLTDVIITGKNGTINGQGQVWWDKFHAKELKF TRGHLLELLYSDNIIISNVTFVDAPQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 206 Download |
| MAPGRSLRPA GTAAVLWAAS LLLLATSCAR AGGAYAGPGC RKHVARVTEY GAVGDGRTLN 60 TAAFARAVAD LARRAPDGGA ALVVPPGKWL TGPFNLTSCF TLYLDEGAEI LASQDMKHWP 120 LIAPLPSYGR GRDEPGPRYS NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFTR 180 GHLLELLYSD NIIISNVTFV DAPQR* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 0.009 | 47 | 168 | 131 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 0.0005 | 47 | 203 | 159 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-6 | 141 | 204 | 65 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-13 | 47 | 203 | 179 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32865.1 | 0 | 15 | 203 | 11 | 199 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABE66001.1 | 0 | 35 | 203 | 35 | 204 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
| RefSeq | NP_001048813.1 | 0 | 15 | 204 | 9 | 199 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 1 | 203 | 1 | 203 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002468601.1 | 0 | 1 | 203 | 1 | 203 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.0000006 | 49 | 104 | 32 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.0000006 | 49 | 104 | 32 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.0000006 | 49 | 104 | 32 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.0000006 | 49 | 104 | 32 | 84 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00005 | 36 | 120 | 148 | 227 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
