y
Basic Information | |
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Species | Zea mays |
Cazyme ID | GRMZM2G119494_T04 |
Family | GH28 |
Protein Properties | Length: 221 Molecular Weight: 23615.9 Isoelectric Point: 8.8663 |
Chromosome | Chromosome/Scaffold: 1 Start: 5345153 End: 5347313 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 79 | 213 | 1.1e-25 |
GAALVVPPGKWLTGPFNLTSCFTLYLDEGAEILASQDMKHWPLIAPLPSYGRGRDEPGPRYSNFIGGSNLTDVIITGKNGTINGQGQVWWDKFHAKELKF TRGHLLELLYSDNIIISNVTFVDAPYWNLHPTYCT |
Full Sequence |
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Protein Sequence Length: 221 Download |
MAPGRSLRPA GTAAVLWAAS LLLLATSCAR AGGAYAGPGC RKHVARVTEY GAVGDGRTLN 60 TAAFARAVAD LARRAPDGGA ALVVPPGKWL TGPFNLTSCF TLYLDEGAEI LASQDMKHWP 120 LIAPLPSYGR GRDEPGPRYS NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFTR 180 GHLLELLYSD NIIISNVTFV DAPYWNLHPT YCTYGSHSQL * 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 0.005 | 47 | 220 | 181 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-6 | 141 | 203 | 64 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-6 | 47 | 220 | 176 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-17 | 47 | 212 | 188 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 15 | 213 | 11 | 209 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABE66001.1 | 0 | 35 | 212 | 35 | 213 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
RefSeq | NP_001048813.1 | 0 | 15 | 213 | 9 | 208 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151102.1 | 0 | 1 | 213 | 1 | 213 | glycoside hydrolase, family 28 [Zea mays] |
RefSeq | XP_002468601.1 | 0 | 1 | 213 | 1 | 213 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.000000003 | 49 | 210 | 32 | 219 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00004 | 77 | 211 | 37 | 179 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |