| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G126077_T01 |
| Family | PL1 |
| Protein Properties | Length: 369 Molecular Weight: 40333 Isoelectric Point: 5.3948 |
| Chromosome | Chromosome/Scaffold: 3 Start: 181751086 End: 181752487 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 80 | 259 | 0 |
| IVFDVSGTIQLSSGVVVSSYKTIDGRGQRVRLRGWGLLLRECEHVIVCALEVEGGRGHDADAVQIKPRSRHVWVDRCSLRGFEDGLVDVTGGSTDVTVSR CHLAAHDKAVLIGASSAHVEDRCIRVTIHHCFFDGTRQRQPRVRFGRVHLYNNYTRDWGIYAVCASVESQIISQCNIYEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 369 Download |
| MAPPSSDGQL GSEPTMEDTK SLLPYRTADS SLRALAGQAE GFGRHAIGGL HGDVYHVTTL 60 DDDGPGSLRE GCRRREPLWI VFDVSGTIQL SSGVVVSSYK TIDGRGQRVR LRGWGLLLRE 120 CEHVIVCALE VEGGRGHDAD AVQIKPRSRH VWVDRCSLRG FEDGLVDVTG GSTDVTVSRC 180 HLAAHDKAVL IGASSAHVED RCIRVTIHHC FFDGTRQRQP RVRFGRVHLY NNYTRDWGIY 240 AVCASVESQI ISQCNIYEAG KKNEVFRYME EQAADKDQSA RGYIRSEGDL FLNDAKQHAA 300 DASEPADAAG DDDPWDFQVQ DSYQFCSVQP ASMALKLLLQ CCTGWQPVPL PADVSLTENA 360 VGPADDTA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 4.0e-20 | 138 | 255 | 126 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-23 | 48 | 297 | 269 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 5.0e-42 | 83 | 261 | 191 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD73403.1 | 0 | 1 | 368 | 1 | 343 | putative pectate lyase [Oryza sativa Japonica Group] |
| GenBank | EAY76417.1 | 0 | 60 | 368 | 1 | 308 | hypothetical protein OsI_04348 [Oryza sativa Indica Group] |
| RefSeq | NP_191074.2 | 0 | 23 | 353 | 4 | 326 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277576.1 | 0 | 2 | 353 | 28 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002456600.1 | 0 | 1 | 368 | 1 | 364 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.99965e-42 | 29 | 321 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.99965e-42 | 29 | 321 | 15 | 331 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-22 | 94 | 257 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-21 | 46 | 257 | 21 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 3e-17 | 101 | 324 | 82 | 311 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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