| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G127309_T03 |
| Family | CBM43 |
| Protein Properties | Length: 489 Molecular Weight: 50071.5 Isoelectric Point: 4.6848 |
| Chromosome | Chromosome/Scaffold: 1 Start: 295348578 End: 295351065 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 313 | 394 | 1e-34 |
| WCVAKSGLMDTALQDGIDYACGVGGADCSAIQPMGACYNPNTLQAHASYAFNSYFQRNPSAASCDFGGAGMLVNVNPSSGTC | |||
| Full Sequence |
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| Protein Sequence Length: 489 Download |
| MLDEMYLICL PEIEMVFSSI PGVSVELSYD SAQVKALSSS AVTEYRVTVT DKRRAYYVFQ 60 KPFVCRDKPC RSSEPIAAAG SFVNEAIAGA KRHEPEANGE LAVVAEIEGA GVVPHVKSRV 120 APSAVAMSSG REKRLLGVLV DVPSPRRELG EARATARDEF SPVSNPATTP VSNPVTVPAT 180 NPMPPGFVTV PSTNPGNGIA TNPNLPPLYP EPTTPGTMPM PDPTTTPVTV PPAFTNPVAA 240 PNTMPGTAVT NPATTPTQFP GSSPVTNPVT TYPYPQQGGM PATTPPAVYQ PPATAMPGTV 300 QPGAPTVAGQ AAWCVAKSGL MDTALQDGID YACGVGGADC SAIQPMGACY NPNTLQAHAS 360 YAFNSYFQRN PSAASCDFGG AGMLVNVNPS SGTCVYQTPA GFGAGYSPGT TGVGVPSGYT 420 PGMSGAVGGG SGSTVLNAND PGGNSMYDDG YDNPTGLTAG SASLSCGGRV VVCLIWMVTF 480 AFVREKML* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-21 | 313 | 383 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-38 | 313 | 396 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF84664.1 | 0 | 5 | 488 | 1 | 491 | unknown [Zea mays] |
| RefSeq | NP_001132166.2 | 0 | 1 | 488 | 1 | 488 | hypothetical protein LOC100193588 [Zea mays] |
| RefSeq | NP_001142611.1 | 0 | 23 | 487 | 137 | 610 | hypothetical protein LOC100274879 [Zea mays] |
| RefSeq | XP_002463588.1 | 6e-20 | 5 | 92 | 11 | 94 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
| RefSeq | XP_002463588.1 | 0 | 34 | 487 | 132 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 7e-18 | 305 | 396 | 5 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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