| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G129635_T01 |
| Family | PL1 |
| Protein Properties | Length: 452 Molecular Weight: 50923.8 Isoelectric Point: 9.0477 |
| Chromosome | Chromosome/Scaffold: 9 Start: 83485973 End: 83487886 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 170 | 370 | 0 |
| ITFAKTMIITLKEELIIRGDKTIDGRGVQVRITNGAQLTLQFVNNVIIHNIHINDIVSSNKDGGYVRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSLS NCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRYI A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MVDGFRWIRP GSFVLYLVFF FLSAALSEAN IGDFDEYWQQ RKLMADAAAE ATYKHDPVEV 60 ANQLNRAVHR SVEKEDIGTR REMMGTTTRK SKFSGPCRAT NPIDRCWRCR QDWATDRKRL 120 ARCAKGFGRN TTGGLAGKFY VVTDGTDDDV VNPRPGTLRW GVIQIEPLWI TFAKTMIITL 180 KEELIIRGDK TIDGRGVQVR ITNGAQLTLQ FVNNVIIHNI HINDIVSSNK DGGYVRDSPD 240 HFGWRTVSDG DGITVFGSTN VWLDHLSLSN CQDGLIDVIA KSTGVTISNC HLTNHNDVML 300 FSSSDKHPED QIMQITVAFN HFGRGLVQRM PRCRWGFFHV VNNDYTHWLM YAIGGSKAPT 360 IISQGNRYIA PPNLAAKQVT KQHDTPESVW KNWVWHSEND LFMEGAYFTV TGGQINRQFN 420 KKDLIKPRNG SYVTRLTRYA GSLACTPGKP C* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 4.0e-11 | 30 | 75 | 46 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-20 | 251 | 366 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-56 | 181 | 368 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-62 | 176 | 372 | 208 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 5 | 451 | 7 | 444 | unknown [Zea mays] |
| RefSeq | NP_001057945.1 | 0 | 27 | 451 | 31 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150723.1 | 0 | 1 | 451 | 1 | 451 | pectate lyase [Zea mays] |
| RefSeq | XP_002437204.1 | 0 | 3 | 451 | 4 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 5 | 451 | 8 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 101 | 441 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 101 | 441 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-21 | 170 | 359 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000003 | 181 | 368 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1pe9_B | 0.00000000001 | 181 | 381 | 80 | 299 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
