| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G130401_T01 |
| Family | GH28 |
| Protein Properties | Length: 309 Molecular Weight: 33119.8 Isoelectric Point: 9.2415 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99549731 End: 99552477 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 64 | 252 | 0 |
| CASACGGTGKQTILIPKGDFLVGQLNFTCPCKGDVTIQVDGNLLATMDLSQYKEHGKWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKILPNS LVMYFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 309 Download |
| MACTDNAMRD LFLLVLFCIV HGEKEESKGI DAKASRPGGS FDITKLGASG NGKTDNTKDV 60 QEACASACGG TGKQTILIPK GDFLVGQLNF TCPCKGDVTI QVDGNLLATM DLSQYKEHGK 120 WIEILRVDNL VITGKGNLDG QGPAVWSKNS CTKKYDCKIL PNSLVMYFVN NGEVSGVTLL 180 NSKFFHMNMY QCKNMLIKDV TVTAPGDSPN TDGIHMGDSS GITITNTVIG VGDDCISIGP 240 GTSKVNITGV TRTRRTSRTS TSRIALLRRR CSASASRRTR TPPPCSPSPR STTRISRWRT 300 QPTPSSST* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-35 | 41 | 250 | 215 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-37 | 41 | 248 | 209 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-39 | 36 | 247 | 217 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-63 | 68 | 250 | 183 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-64 | 11 | 250 | 240 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD79098.1 | 0 | 2 | 251 | 3 | 252 | Zea m 13 allergen [Zea mays] |
| EMBL | CAA44248.1 | 0 | 1 | 251 | 1 | 251 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 251 | 1 | 251 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 251 | 1 | 251 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35338 | 0 | 1 | 251 | 1 | 251 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.000002 | 37 | 241 | 24 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.000002 | 37 | 241 | 24 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.000002 | 37 | 241 | 24 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.000002 | 37 | 241 | 24 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00009 | 27 | 244 | 143 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
