| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G131912_T01 |
| Family | PL1 |
| Protein Properties | Length: 480 Molecular Weight: 51348.5 Isoelectric Point: 7.5759 |
| Chromosome | Chromosome/Scaffold: 2 Start: 109575238 End: 109580764 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 193 | 398 | 0 |
| IQEEPLWIIFKRDMVITLREELIMNSFKTIDGRGANVHIANGACVTIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHVWVD HCSLSNCADGLIDAIMGSTAITLSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 480 Download |
| MAEADCSAAR TRTAGLAAAA AAAAFLVLVV VAGSAVLPGA RVRVLDGLRH RSTAVAAGGA 60 RRWLRDSSWP APVAATTTTR GRADDGDAGG PSRAVTGAVE DPEAVANDVH VSIRNSTARR 120 NLGYLSCGTG NPIDDCWRCD SDWHSNRQRL ADCGIGFGRN AIGGRDGKVY VVTDPSDDDP 180 VNPREGTLRH AVIQEEPLWI IFKRDMVITL REELIMNSFK TIDGRGANVH IANGACVTIQ 240 YVTNVIIHGL HIHDCRPTGN AMVRSSPSHY GWRTMADGDG VSIFGSSHVW VDHCSLSNCA 300 DGLIDAIMGS TAITLSNNYF THHNEVMLLG HSDSYVKDKA MQVTIAFNHF GEGLIQRMPR 360 CRHGYFHVVN NDYTHWEMYA IGGSAEPTIN SQGNRYLAPT NPFAKEVTKR VETAQTVWKS 420 WNWRSEGDLL LNGAYFTPSG AGASASYSRA SSLGAKSSSM VGTITSDAGA LSCRKGAAC* 480 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-26 | 218 | 411 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-71 | 212 | 396 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-80 | 205 | 399 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02420.2 | 0 | 43 | 479 | 36 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC76710.1 | 0 | 43 | 479 | 36 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
| GenBank | EEE60442.1 | 0 | 82 | 479 | 43 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001141589.1 | 0 | 41 | 479 | 40 | 466 | hypothetical protein LOC100273705 [Zea mays] |
| RefSeq | NP_001147553.1 | 0 | 1 | 479 | 1 | 467 | pectate lyase 8 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 131 | 472 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 131 | 472 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-16 | 200 | 397 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000002 | 211 | 396 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1pe9_B | 0.00000000000005 | 211 | 470 | 80 | 358 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
