| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G131912_T02 |
| Family | PL1 |
| Protein Properties | Length: 275 Molecular Weight: 29782.5 Isoelectric Point: 7.6307 |
| Chromosome | Chromosome/Scaffold: 2 Start: 109575340 End: 109580600 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 3 | 193 | 0 |
| ITLREELIMNSFKTIDGRGANVHIANGACVTIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHVWVDHCSLSNCADGLIDAI MGSTAITLSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 275 Download |
| MVITLREELI MNSFKTIDGR GANVHIANGA CVTIQYVTNV IIHGLHIHDC RPTGNAMVRS 60 SPSHYGWRTM ADGDGVSIFG SSHVWVDHCS LSNCADGLID AIMGSTAITL SNNYFTHHNE 120 VMLLGHSDSY VKDKAMQVTI AFNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA 180 EPTINSQGNR YLAPTNPFAK EVTKRVETAQ TVWKSWNWRS EGDLLLNGAY FTPSGAGASA 240 SYSRASSLGA KSSSMVGTIT SDAGALSCRK GAAC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-26 | 13 | 206 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-71 | 7 | 191 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-79 | 1 | 194 | 205 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF84425.1 | 0 | 1 | 274 | 1 | 274 | unknown [Zea mays] |
| GenBank | ACN35280.1 | 0 | 1 | 274 | 1 | 274 | unknown [Zea mays] |
| GenBank | EEE60442.1 | 0 | 1 | 274 | 170 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001141589.1 | 0 | 1 | 274 | 193 | 466 | hypothetical protein LOC100273705 [Zea mays] |
| RefSeq | NP_001147553.1 | 0 | 1 | 274 | 207 | 467 | pectate lyase 8 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 1 | 267 | 76 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 1 | 267 | 76 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-16 | 1 | 192 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000000002 | 6 | 191 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1pe9_B | 0.000000000000006 | 6 | 265 | 80 | 358 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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