| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G137077_T01 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 50296.1 Isoelectric Point: 7.9273 |
| Chromosome | Chromosome/Scaffold: 7 Start: 132820064 End: 132822170 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 51 | 382 | 0 |
| VDACAAAGGGRVLLPAPGNYLTATVQLRSRVVLEVPPGARLLGGTRQADYPPESRRWYVVLAENTTGAGITGGGEINGQGGAFVVRPSEVKNVMVSWNAT GDCLGDECRPRLVGFIDSKDVRIHDITLNQPAYWCLHLVRCDNTVIHNVSIFGDFKTPNNDGIDIEDSNNTVITDCHIDTGDDAISPKSTTGPVYNLTAT NCWMRTKSCAIKFGSASFFDFKRLVFDNITIVDSHRGLGMQIRDGGNVNDVVFSNIKMRTRYYHPLWWGRAEPIYITTCPRHPDSKEGAISDIRFINISS VSENGVFLAGSKHGLLRNLKFKNIDLTYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MTSPIQLAAA PLLLLVVVVA GTRSSRIFSV ADYGAAGDGF RYDTAAIQAA VDACAAAGGG 60 RVLLPAPGNY LTATVQLRSR VVLEVPPGAR LLGGTRQADY PPESRRWYVV LAENTTGAGI 120 TGGGEINGQG GAFVVRPSEV KNVMVSWNAT GDCLGDECRP RLVGFIDSKD VRIHDITLNQ 180 PAYWCLHLVR CDNTVIHNVS IFGDFKTPNN DGIDIEDSNN TVITDCHIDT GDDAISPKST 240 TGPVYNLTAT NCWMRTKSCA IKFGSASFFD FKRLVFDNIT IVDSHRGLGM QIRDGGNVND 300 VVFSNIKMRT RYYHPLWWGR AEPIYITTCP RHPDSKEGAI SDIRFINISS VSENGVFLAG 360 SKHGLLRNLK FKNIDLTYKR WTNYTGGLYD YRPGCQEMVK HKTGGMMLEH ISGLEIDNVR 420 MRWARGSLKG WNVNPILFRP STIDNLSFHD WQSVDVQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-8 | 159 | 252 | 94 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-10 | 160 | 379 | 236 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 7.0e-10 | 23 | 376 | 393 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-15 | 160 | 378 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-34 | 24 | 309 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 26 | 457 | 25 | 456 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 26 | 457 | 25 | 455 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 26 | 457 | 25 | 451 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 1 | 457 | 1 | 457 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 26 | 457 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7e-16 | 26 | 239 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7e-16 | 26 | 239 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7e-16 | 26 | 239 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7e-16 | 26 | 239 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000002 | 26 | 309 | 155 | 488 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
