| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G139828_T01 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 48945 Isoelectric Point: 5.3322 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2862831 End: 2866685 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 74 | 422 | 0 |
| ADKGGAQLYVPRGRWLTGSFNLTSHLTLYLEEGAVIVGAKDSSQWLIVEPLPSYGQGLDLPGPRHQSLISGYNLTDVVITGNNGVIDGQGLVWWQWLRSH ELNHSRPNLLEFLYSEDIVISNLTFLNSPAWSIHPVYCSNVKVHNVTIKTSLDAPLTDGIVPDSCSNLCIEDSTISVSHEAISLKSGWDRYGISFGRPTS DIRISRVDLLSSSGAALAFGSEMSGGISDIHVNHLRIHDSSKGISFKTSPGRGGYIEDVVISEVQMENVHVGIEFTGNCSTHPDDSFDPSDLPAIDHVTM KNMAGTNISVAGVLSGIEGAPFTAICLSNLNFSMAAGSGPSSWSCSDVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MKRLVVVLAL VLAAALGPAT APAPARAQLR RDHQAPPGPR PHSVTITEFG AVGDGRTLNT 60 VPFQNAVFYV RSFADKGGAQ LYVPRGRWLT GSFNLTSHLT LYLEEGAVIV GAKDSSQWLI 120 VEPLPSYGQG LDLPGPRHQS LISGYNLTDV VITGNNGVID GQGLVWWQWL RSHELNHSRP 180 NLLEFLYSED IVISNLTFLN SPAWSIHPVY CSNVKVHNVT IKTSLDAPLT DGIVPDSCSN 240 LCIEDSTISV SHEAISLKSG WDRYGISFGR PTSDIRISRV DLLSSSGAAL AFGSEMSGGI 300 SDIHVNHLRI HDSSKGISFK TSPGRGGYIE DVVISEVQME NVHVGIEFTG NCSTHPDDSF 360 DPSDLPAIDH VTMKNMAGTN ISVAGVLSGI EGAPFTAICL SNLNFSMAAG SGPSSWSCSD 420 VSGYSEAVFP EPCTELRDPS SSSSVCYSLA SYSAIETA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-17 | 42 | 434 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 4.0e-19 | 42 | 430 | 412 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-23 | 142 | 421 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-23 | 41 | 404 | 384 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 2.0e-44 | 44 | 344 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC68574.1 | 0 | 37 | 455 | 28 | 446 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 37 | 458 | 3 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 37 | 455 | 28 | 446 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130359.1 | 0 | 26 | 458 | 26 | 458 | hypothetical protein LOC100191454 [Zea mays] |
| RefSeq | XP_002451220.1 | 0 | 25 | 458 | 17 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-35 | 32 | 402 | 16 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-35 | 32 | 402 | 16 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-35 | 32 | 402 | 16 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-35 | 32 | 402 | 16 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 88 | 342 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
