| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G153666_T01 |
| Family | GH28 |
| Protein Properties | Length: 427 Molecular Weight: 45036.5 Isoelectric Point: 8.9193 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99126090 End: 99127956 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 413 | 0 |
| TEACATPGRPAVVVPRGDYLLHPLVFRGPCRGYVEVHVGGVLRAPPGLAAFRGCREWVHFSSIDGLLVTGGGTFDGRGATAWPLNECPQKRDCRLLPTVS SATCATILLHSDIIVVQRRHQSIKLGLVRNATITGVTSLDSKFFHVAVVGSQDVRIHGVSIRAPRSSPNTDGVHIQGSSNVRVTDSAVATGDDCVSVGPG SSDVLVSGVACGPGHGISVGSLGRYPGEGDVRRLRVANCTVAGTSNGVRIKTWRGGSWPPTAVAGLVFEDIVMRKVRNPIIIDQEYCPYPSCRESEQRPS AVRISDVKFRNIRGESATKVAVKLSCSEASPCRELELRDIDLRYVKRGVATQSRCAHVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 427 Download |
| MPLRLAALLL LATTATWTAG VTAAAAGRVF NVSDFGAVAD GRTDDSEAFL RAWTEACATP 60 GRPAVVVPRG DYLLHPLVFR GPCRGYVEVH VGGVLRAPPG LAAFRGCREW VHFSSIDGLL 120 VTGGGTFDGR GATAWPLNEC PQKRDCRLLP TVSSATCATI LLHSDIIVVQ RRHQSIKLGL 180 VRNATITGVT SLDSKFFHVA VVGSQDVRIH GVSIRAPRSS PNTDGVHIQG SSNVRVTDSA 240 VATGDDCVSV GPGSSDVLVS GVACGPGHGI SVGSLGRYPG EGDVRRLRVA NCTVAGTSNG 300 VRIKTWRGGS WPPTAVAGLV FEDIVMRKVR NPIIIDQEYC PYPSCRESEQ RPSAVRISDV 360 KFRNIRGESA TKVAVKLSCS EASPCRELEL RDIDLRYVKR GVATQSRCAH VAGGVVGGTL 420 VPPSCI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-85 | 27 | 413 | 392 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-86 | 29 | 426 | 399 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-91 | 28 | 425 | 401 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-94 | 57 | 399 | 343 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-139 | 30 | 425 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85236.1 | 0 | 11 | 426 | 12 | 412 | polygalacturonase precursor [Oryza minuta] |
| GenBank | ACN85327.1 | 0 | 3 | 426 | 4 | 405 | polygalacturonase precursor [Oryza brachyantha] |
| GenBank | ACR38466.1 | 0 | 1 | 348 | 1 | 348 | unknown [Zea mays] |
| RefSeq | NP_001152243.1 | 0 | 1 | 426 | 1 | 403 | polygalacturonase [Zea mays] |
| RefSeq | XP_002437276.1 | 0 | 1 | 426 | 1 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-17 | 105 | 395 | 97 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000000003 | 26 | 393 | 17 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 0.0000000000004 | 181 | 414 | 112 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 0.0000000000004 | 181 | 414 | 112 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ia5_A | 0.0000000000004 | 181 | 414 | 112 | 336 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
