| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G160626_T01 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 43228.6 Isoelectric Point: 8.1944 |
| Chromosome | Chromosome/Scaffold: 6 Start: 98953600 End: 98955182 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 65 | 399 | 0 |
| ASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCKILPNSL VMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLG RYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLLC SAKIPCTGVTMDDVNINYSGTNNKTMAVCKNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MACIDNAMRA LFLLALFCTV HGEKAKSKDN DSKASGPGGS FDITKLGASG NGKTDSTKAV 60 QEAWASACGG TGKQTILIPK GDFLVGPLNF TGPCKGDVTI QVNGNLLATT DLSQYKDHGN 120 WIEILRVDNL VITGKGKLDG QGPAVWSKNS CVKKYDCKIL PNSLVMDFVN NGEVSGITLL 180 NSKFFHMNMY KCKDMLIKDV NVTAPGDSPN TDGIHMGDSS GVTITNTVIG VGDDCISIGP 240 GTSKVNITGV TCGPGHGISI GSLGRYKDEK DVTDINVKDC TLKKTANGVR IKAYEDAASV 300 LTASKIHYEN IKMEDSGYPI IIDMKYCPNK LCTANGASKV TVKDVTFKNI TGTSSTPEAV 360 NLLCSAKIPC TGVTMDDVNI NYSGTNNKTM AVCKNAKGSA KGCLKALACF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-82 | 41 | 410 | 371 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-83 | 43 | 402 | 365 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-87 | 41 | 410 | 374 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-126 | 68 | 400 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-130 | 6 | 397 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD79097.1 | 0 | 7 | 410 | 1 | 404 | Zea m 13 allergen [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 410 | 1 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 410 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001105862.1 | 0 | 1 | 410 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 1 | 410 | 1 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-18 | 138 | 400 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-18 | 138 | 400 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-18 | 138 | 400 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-18 | 138 | 400 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-18 | 138 | 400 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
