| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G162384_T02 |
| Family | GH28 |
| Protein Properties | Length: 329 Molecular Weight: 35466.6 Isoelectric Point: 6.3387 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99192356 End: 99193776 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 17 | 315 | 0 |
| SCMVDGNLLATTYLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPFVWSKNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKDMLIK DVTVTAPGDSPNTDGIHMGDTSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTTFGVRIKAYEDAA SELTVSKIHYENVKMEDSTNPIFIDMMYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLCTAKIQCTGVTMDDVNVEYSGTNNKTMDICTNTK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 329 Download |
| MAYTDNAMRA LLRSSTSCMV DGNLLATTYL SQYKEHGNWI EILRVDNLVI TGKGNLDGQG 60 PFVWSKNSCT KKYDCKILPN SLVMDFVNNG EVSGVTLLNS KFFHMNMYQC KDMLIKDVTV 120 TAPGDSPNTD GIHMGDTSGI TITNTVIGVG DDCISIGPGT SKVNITGVTC GPGHGISIGS 180 LGRYKDEKDV TDINVKDCTL KKTTFGVRIK AYEDAASELT VSKIHYENVK MEDSTNPIFI 240 DMMYCPNKLC TANGASKVTV KDVTFKNITG TSSTPEAISL LCTAKIQCTG VTMDDVNVEY 300 SGTNNKTMDI CTNTKGCTKG CLKELACF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 9.0e-57 | 13 | 328 | 317 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-59 | 36 | 328 | 295 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-60 | 22 | 299 | 282 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 3.0e-100 | 24 | 315 | 292 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-111 | 12 | 315 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PIR | 0 | 13 | 328 | 48 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
| EMBL | CAA40910.1 | 0 | 13 | 328 | 91 | 406 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 13 | 328 | 95 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 13 | 328 | 95 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35338 | 0 | 13 | 328 | 95 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-16 | 56 | 313 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-16 | 56 | 313 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-16 | 56 | 313 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-16 | 56 | 313 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-16 | 56 | 313 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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