| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G170388_T01 |
| Family | GH28 |
| Protein Properties | Length: 500 Molecular Weight: 51603.7 Isoelectric Point: 6.9034 |
| Chromosome | Chromosome/Scaffold: 3 Start: 51898810 End: 51900852 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 125 | 467 | 0 |
| WDTACQDDGASVVLAAAGYSFLVHTTVFTGPCQGSVTIQLDGTIVAPSDPDMWPANSKRNWLLFYQAHGMSLRGAGLIDGKGQKWWDLPCKSHKGQGGSS GHGASCDSPVALRFFMTNNVTVQGLKVQNSPEFHIRFDSCRGVVASGLSISSPALSPNTDGIHVENTQDVLITNTAVSNGDDCVSIGAGTLNMHVENVTC GPGGHGISIGSLGKQGSRACVANVTVRNAVIRHSDNGVRIKTWQGGSGAVSSVSFQNVRMDAVRNPIIIDQYYCLSKSCENATSAVFVSGVSYAGIRGTY DPRTPPIHFGCSDAVPCTNITLSDVELLPASGETIDDPFCWNV | |||
| Full Sequence |
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| Protein Sequence Length: 500 Download |
| MEFTARTAIA LLLSLAVSSS FLCGSVQGGR HHHHGKHAKH SSAHPPSAHA PGPASGRRHA 60 RPVSPPAPPP SSGSGGYPTP GGAAPEPAPA PAAAAAGGTV YDVVKDFGAV GDGVTDDTGA 120 IKTAWDTACQ DDGASVVLAA AGYSFLVHTT VFTGPCQGSV TIQLDGTIVA PSDPDMWPAN 180 SKRNWLLFYQ AHGMSLRGAG LIDGKGQKWW DLPCKSHKGQ GGSSGHGASC DSPVALRFFM 240 TNNVTVQGLK VQNSPEFHIR FDSCRGVVAS GLSISSPALS PNTDGIHVEN TQDVLITNTA 300 VSNGDDCVSI GAGTLNMHVE NVTCGPGGHG ISIGSLGKQG SRACVANVTV RNAVIRHSDN 360 GVRIKTWQGG SGAVSSVSFQ NVRMDAVRNP IIIDQYYCLS KSCENATSAV FVSGVSYAGI 420 RGTYDPRTPP IHFGCSDAVP CTNITLSDVE LLPASGETID DPFCWNVYGS TATPTVPPVP 480 CLIEGVPRNL DDNSSLKCY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-70 | 123 | 481 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-71 | 124 | 482 | 365 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-81 | 122 | 451 | 332 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-86 | 129 | 451 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-114 | 122 | 482 | 362 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD86981.1 | 0 | 99 | 499 | 16 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY73623.1 | 0 | 19 | 499 | 22 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
| RefSeq | NP_001042805.1 | 0 | 32 | 499 | 36 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150436.1 | 0 | 1 | 499 | 1 | 499 | polygalacturonase [Zea mays] |
| RefSeq | XP_002455500.1 | 0 | 1 | 499 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-22 | 194 | 467 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-22 | 194 | 467 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-22 | 194 | 467 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-22 | 194 | 467 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-22 | 194 | 467 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
