| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G174598_T01 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 48173.6 Isoelectric Point: 8.5585 |
| Chromosome | Chromosome/Scaffold: 4 Start: 224909714 End: 224912525 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 80 | 426 | 0 |
| RRRGGTTLHVPAGTWLAGSFNLTSHMTLFLARGAVLKATQDTRGWPLVEPLPSYGRGRELPGPRYASFIHGDGLRDVVITGDRGVIDGQGEVWWNMWRRR TLEHTRPNLVEFMHSTGIHISNIVLKNSPFWNIHPVYCDNVVVTNMMILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSA GVTVRRVRGSSPFSGIAIGSEASGGVRDVLVEDCAIFDSGYGIHIKTNVGRGGYIRNVTVDGVRLTGVRSGVRIAGDVGDHPDAHFSQLAVPTVDAVRIS NVWGVNVQQPGSLEGIRASPFTRICLSNVKLFGWRSDAAWKCRDVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MAAATSRGPA SVAICALAVL HAMAALCDSA TAAAATCAGL APAKHRPEVI SIADFGGVGD 60 GRTLNTWAFR KAVYRIQHQR RRGGTTLHVP AGTWLAGSFN LTSHMTLFLA RGAVLKATQD 120 TRGWPLVEPL PSYGRGRELP GPRYASFIHG DGLRDVVITG DRGVIDGQGE VWWNMWRRRT 180 LEHTRPNLVE FMHSTGIHIS NIVLKNSPFW NIHPVYCDNV VVTNMMILAP RDSPNTDGVD 240 PDSSSNVCIE DSYISTGDDL VAIKSGWDEY GIAYGRPSAG VTVRRVRGSS PFSGIAIGSE 300 ASGGVRDVLV EDCAIFDSGY GIHIKTNVGR GGYIRNVTVD GVRLTGVRSG VRIAGDVGDH 360 PDAHFSQLAV PTVDAVRISN VWGVNVQQPG SLEGIRASPF TRICLSNVKL FGWRSDAAWK 420 CRDVRGAALG VQPSPCAELA TSFASARSSC S* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-23 | 44 | 437 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-26 | 47 | 412 | 382 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-29 | 50 | 446 | 418 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-32 | 155 | 424 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-51 | 49 | 374 | 357 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33336.1 | 0 | 1 | 451 | 1 | 451 | unknown [Zea mays] |
| GenBank | ACN36471.1 | 0 | 105 | 451 | 1 | 347 | unknown [Zea mays] |
| GenBank | EAY85246.1 | 0 | 27 | 449 | 22 | 442 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
| RefSeq | NP_001046468.1 | 0 | 27 | 449 | 22 | 442 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002451891.1 | 0 | 36 | 451 | 31 | 448 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-37 | 50 | 414 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-37 | 50 | 414 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-37 | 50 | 414 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-37 | 50 | 414 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-20 | 84 | 425 | 39 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
