Basic Information | |
---|---|
Species | Zea mays |
Cazyme ID | GRMZM2G175698_T02 |
Family | PL4 |
Protein Properties | Length: 575 Molecular Weight: 63519.5 Isoelectric Point: 7.7007 |
Chromosome | Chromosome/Scaffold: 5 Start: 111537704 End: 111541969 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 4 | 541 | 0 |
VILHYRLVVLKGSSGFYCYAILEHARDWPALNVTEARLAFKLNTDAFKYMAVSDDIQRYMPSAADRAEPRGAPLAYKEAVLLVNPQEPRFRGEVDDKYQY SMDNKDSTVHGWTTAGGVERSPNDNPVVGFWVITPSNEFKSGGPTKRELTSHVGPTTLTMFLGTHYVGNDIVLSISGGEYWKKVMGPVFVYLNSRPRRGG IGGCDHSRALWADAKAQARAEAGKWPYSFPKSPDFAKAGERGGVTGRLLVRDDDRFTTDDDNNDAAAAPMPVGTEAYVGLAAPGQAGSWVTECKGYQFWT ATTATEDGFVFTIANVREGVYSLYAWVPGVLGEYVHASPVTVAVGGAVVDLGDLVFRPPRSGPTLWEIGVPDRKAAEFFVPDVDPRFANRLFLHKDRYRQ YGLWARYAELYPDGDPVFTVGRSEPWKDWFFAHVTRKVGEGRYAPTTREIRFRLYRVVADGTYTLRVSLAAAHMSRLQVRVNGRGGGGAAELTTPEFGGG NAIARHGIHGVQWNFQFPIRGYLLREGDNSVSITQTRA |
Full Sequence |
---|
Protein Sequence Length: 575 Download |
MDPVILHYRL VVLKGSSGFY CYAILEHARD WPALNVTEAR LAFKLNTDAF KYMAVSDDIQ 60 RYMPSAADRA EPRGAPLAYK EAVLLVNPQE PRFRGEVDDK YQYSMDNKDS TVHGWTTAGG 120 VERSPNDNPV VGFWVITPSN EFKSGGPTKR ELTSHVGPTT LTMFLGTHYV GNDIVLSISG 180 GEYWKKVMGP VFVYLNSRPR RGGIGGCDHS RALWADAKAQ ARAEAGKWPY SFPKSPDFAK 240 AGERGGVTGR LLVRDDDRFT TDDDNNDAAA APMPVGTEAY VGLAAPGQAG SWVTECKGYQ 300 FWTATTATED GFVFTIANVR EGVYSLYAWV PGVLGEYVHA SPVTVAVGGA VVDLGDLVFR 360 PPRSGPTLWE IGVPDRKAAE FFVPDVDPRF ANRLFLHKDR YRQYGLWARY AELYPDGDPV 420 FTVGRSEPWK DWFFAHVTRK VGEGRYAPTT REIRFRLYRV VADGTYTLRV SLAAAHMSRL 480 QVRVNGRGGG GAAELTTPEF GGGNAIARHG IHGVQWNFQF PIRGYLLREG DNSVSITQTR 540 ADGEFLGVLY DYVRLEAPPA HCRDPTATAT TWRT* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-16 | 243 | 341 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-43 | 369 | 556 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-45 | 3 | 97 | 95 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 7.0e-50 | 8 | 197 | 190 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 9 | 568 | 156 | 699 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF27519.2 | 0 | 10 | 566 | 115 | 641 | Os11g0134100 [Oryza sativa Japonica Group] |
RefSeq | NP_001066077.1 | 0 | 9 | 568 | 156 | 686 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152385.1 | 0 | 9 | 574 | 159 | 724 | lyase [Zea mays] |
RefSeq | XP_002441731.1 | 0 | 9 | 565 | 174 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |