| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G175698_T03 |
| Family | PL4 |
| Protein Properties | Length: 725 Molecular Weight: 79510.2 Isoelectric Point: 7.2366 |
| Chromosome | Chromosome/Scaffold: 5 Start: 111537704 End: 111541969 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 54 | 690 | 0 |
| DDYLHQVAVDNGLVQVTLSKPQGHITGVRYNGHRNLLHYDGSQNSGGYWDVVWNYPGSDQPGGMMDTLDSTEFKVVVSSEDQVELSFSSAYTPSSPTSVH LHVDKRLVVLKGSSGFYCYAILEHARDWPALNVTEARLAFKLNTDAFKYMAVSDDIQRYMPSAADRAEPRGAPLAYKEAVLLVNPQEPRFRGEVDDKYQY SMDNKDSTVHGWTTAGGVERSPNDNPVVGFWVITPSNEFKSGGPTKRELTSHVGPTTLTMFLGTHYVGNDIVLSISGGEYWKKVMGPVFVYLNSRPRRGG IGGCDHSRALWADAKAQARAEAGKWPYSFPKSPDFAKAGERGGVTGRLLVRDDDRFTTDDDNNDAAAAPMPVGTEAYVGLAAPGQAGSWVTECKGYQFWT ATTATEDGFVFTIANVREGVYSLYAWVPGVLGEYVHASPVTVAVGGAVVDLGDLVFRPPRSGPTLWEIGVPDRKAAEFFVPDVDPRFANRLFLHKDRYRQ YGLWARYAELYPDGDPVFTVGRSEPWKDWFFAHVTRKVGEGRYAPTTREIRFRLYRVVADGTYTLRVSLAAAHMSRLQVRVNGRGGGGAAELTTPEFGGG NAIARHGIHGVQWNFQFPIRGYLLREGDNSVSITQTR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 725 Download |
| MAAATVVGGT WTRTSRSSLS LVVVFLLLHM GVGATATPPR HHTAAASGIT LRVDDYLHQV 60 AVDNGLVQVT LSKPQGHITG VRYNGHRNLL HYDGSQNSGG YWDVVWNYPG SDQPGGMMDT 120 LDSTEFKVVV SSEDQVELSF SSAYTPSSPT SVHLHVDKRL VVLKGSSGFY CYAILEHARD 180 WPALNVTEAR LAFKLNTDAF KYMAVSDDIQ RYMPSAADRA EPRGAPLAYK EAVLLVNPQE 240 PRFRGEVDDK YQYSMDNKDS TVHGWTTAGG VERSPNDNPV VGFWVITPSN EFKSGGPTKR 300 ELTSHVGPTT LTMFLGTHYV GNDIVLSISG GEYWKKVMGP VFVYLNSRPR RGGIGGCDHS 360 RALWADAKAQ ARAEAGKWPY SFPKSPDFAK AGERGGVTGR LLVRDDDRFT TDDDNNDAAA 420 APMPVGTEAY VGLAAPGQAG SWVTECKGYQ FWTATTATED GFVFTIANVR EGVYSLYAWV 480 PGVLGEYVHA SPVTVAVGGA VVDLGDLVFR PPRSGPTLWE IGVPDRKAAE FFVPDVDPRF 540 ANRLFLHKDR YRQYGLWARY AELYPDGDPV FTVGRSEPWK DWFFAHVTRK VGEGRYAPTT 600 REIRFRLYRV VADGTYTLRV SLAAAHMSRL QVRVNGRGGG GAAELTTPEF GGGNAIARHG 660 IHGVQWNFQF PIRGYLLREG DNSVSITQTR ADGEFLGVLY DYVRLEAPPA HCRDPTATAT 720 TWRT* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-16 | 393 | 491 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-42 | 519 | 706 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-64 | 59 | 347 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-92 | 59 | 247 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 36 | 718 | 35 | 699 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 36 | 708 | 35 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 36 | 718 | 35 | 686 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152385.1 | 0 | 1 | 724 | 1 | 724 | lyase [Zea mays] |
| RefSeq | XP_002441731.1 | 0 | 1 | 715 | 1 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
