| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G175698_T04 |
| Family | PL4 |
| Protein Properties | Length: 523 Molecular Weight: 57519.5 Isoelectric Point: 7.3763 |
| Chromosome | Chromosome/Scaffold: 5 Start: 111537704 End: 111541969 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 18 | 489 | 0 |
| AEPRGAPLAYKEAVLLVNPQEPRFRGEVDDKYQYSMDNKDSTVHGWTTAGGVERSPNDNPVVGFWVITPSNEFKSGGPTKRELTSHVGPTTLTMFLGTHY VGNDIVLSISGGEYWKKVMGPVFVYLNSRPRRGGIGGCDHSRALWADAKAQARAEAGKWPYSFPKSPDFAKAGERGGVTGRLLVRDDDRFTTDDDNNDAA AAPMPVGTEAYVGLAAPGQAGSWVTECKGYQFWTATTATEDGFVFTIANVREGVYSLYAWVPGVLGEYVHASPVTVAVGGAVVDLGDLVFRPPRSGPTLW EIGVPDRKAAEFFVPDVDPRFANRLFLHKDRYRQYGLWARYAELYPDGDPVFTVGRSEPWKDWFFAHVTRKVGEGRYAPTTREIRFRLYRVVADGTYTLR VSLAAAHMSRLQVRVNGRGGGGAAELTTPEFGGGNAIARHGIHGVQWNFQFPIRGYLLREGDNSVSITQTRA | |||
| Full Sequence |
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| Protein Sequence Length: 523 Download |
| MAVSDDIQRY MPSAADRAEP RGAPLAYKEA VLLVNPQEPR FRGEVDDKYQ YSMDNKDSTV 60 HGWTTAGGVE RSPNDNPVVG FWVITPSNEF KSGGPTKREL TSHVGPTTLT MFLGTHYVGN 120 DIVLSISGGE YWKKVMGPVF VYLNSRPRRG GIGGCDHSRA LWADAKAQAR AEAGKWPYSF 180 PKSPDFAKAG ERGGVTGRLL VRDDDRFTTD DDNNDAAAAP MPVGTEAYVG LAAPGQAGSW 240 VTECKGYQFW TATTATEDGF VFTIANVREG VYSLYAWVPG VLGEYVHASP VTVAVGGAVV 300 DLGDLVFRPP RSGPTLWEIG VPDRKAAEFF VPDVDPRFAN RLFLHKDRYR QYGLWARYAE 360 LYPDGDPVFT VGRSEPWKDW FFAHVTRKVG EGRYAPTTRE IRFRLYRVVA DGTYTLRVSL 420 AAAHMSRLQV RVNGRGGGGA AELTTPEFGG GNAIARHGIH GVQWNFQFPI RGYLLREGDN 480 SVSITQTRAD GEFLGVLYDY VRLEAPPAHC RDPTATATTW RT* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-16 | 191 | 289 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-18 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10320 | RGL4_N | 6.0e-36 | 8 | 145 | 138 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 4.0e-43 | 317 | 504 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF27519.2 | 0 | 1 | 514 | 158 | 641 | Os11g0134100 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 1 | 516 | 200 | 686 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152385.1 | 0 | 1 | 522 | 203 | 724 | lyase [Zea mays] |
| RefSeq | XP_002441731.1 | 0 | 1 | 513 | 218 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
| RefSeq | XP_002450207.1 | 0 | 1 | 507 | 189 | 678 | hypothetical protein SORBIDRAFT_05g001980 [Sorghum bicolor] |
| Hydropathy |
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