| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G178916_T03 |
| Family | CE8 |
| Protein Properties | Length: 1361 Molecular Weight: 149322 Isoelectric Point: 6.237 |
| Chromosome | Chromosome/Scaffold: 9 Start: 151299974 End: 151309638 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 25 | 305 | 0 |
| LASVQDAVDTVPLNNQTRTVIRIGPGVHQQQVRIPRTKNFITLCGSSIKDTVICWDNRTTTCIKHTQPSGAIGTGTLSSATVIVEGDDFIAENVIFKNSA PQSGQAAAVRVTADRCAFYDCRFLGWQETLHLHGGKQLLKNCYVEGSYDFIFGDSAALLEHCHIHCKSAGYITAHGRKSSSEPTGFVFFKCVITGNGEAA YMYLGRPWEPFGRVVFAETFMDRCIEPAGWHNWDKPDNEQTACFYEYRCSGPGSSSSGRERWCKELFGDEAMPFLAQTFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1361 Download |
| MGDRRVLLVA SPEVAVFGYD GVVSLASVQD AVDTVPLNNQ TRTVIRIGPG VHQQQVRIPR 60 TKNFITLCGS SIKDTVICWD NRTTTCIKHT QPSGAIGTGT LSSATVIVEG DDFIAENVIF 120 KNSAPQSGQA AAVRVTADRC AFYDCRFLGW QETLHLHGGK QLLKNCYVEG SYDFIFGDSA 180 ALLEHCHIHC KSAGYITAHG RKSSSEPTGF VFFKCVITGN GEAAYMYLGR PWEPFGRVVF 240 AETFMDRCIE PAGWHNWDKP DNEQTACFYE YRCSGPGSSS SGRERWCKEL FGDEAMPFLA 300 QTFIDPDIEN PWLVHSKAVA VVGDLGDAQL VAHPDELLPE PPGSLLVQGE PTRQCKVNSR 360 FPAGVQSKSQ TEKTAAAAYH RAAGRVAADG LLQRAAVEED LLVVVVGENG VELPAGAEHR 420 EPGLRRRAVE LQQPARVGGT AVSLHPAGCR PFILKFEDPG GASERSYYLL LQPTVPDLGA 480 LRASAASRRR LDHGREVEAG PGAYQRGRRV TDRERGARRV AAPSPVGQIV EQTPRGQWAA 540 ALLAYCLCLA SVYPTTSRGP TVERGSRSTE YSEIWPVSTA FSSLTSTSCR SALTPRPAFM 600 AVTFPSPTPR SPRRPDAIVA PDPSSADMSP SLDFGDPTSF TALRVLTDGG AATRLLHECV 660 AYQRALDARL DALLARRADL DRAAASLLRS APPLLSLAAS DAAALKESSS STAALADALS 720 SRVRHLDAAH SRADAALARA EAALDRSRAL EATRRALAAD DLAAAATAAH EFLAIDARFP 780 TDDDLRRDLI DIKRRLEGLA RRRLAAVVDA QDHPAVLRLV RLFPLLGLAD EGLQVYVAYL 840 KKVVALRARA DFEHLAELTS ATQPTSDRPD FVGCLTRLFK DIVLAVEEND GVLRELRGDD 900 VAYAIIELQE ECDSRGTQIL RRYADYRKLA RLASDINSYT KNLLSVMGSM ASAAGGNEGP 960 DPREIELYLE EILALTQLGE DYTEFMVNKI RVLRDVKPEL GPRAMKAFRN GNFNKMEQDL 1020 TGFYVIFEEF FMVENVRKAI RIDEPISDGL TTSMVDDVFF VLQSCCRRAT STASINSVIA 1080 VLGGATSLLS NEYQEALQWR MREPNLGAKL FLGGVGVQKT GEEIATALNN IDISSEYVLK 1140 LRHEIEELCV EIFHTPADRE KIKSCLSELG EISASFKKIL HSALEHLVAS VAPRIRPILD 1200 TVATVSYGLD DAEYGENEVN DPWVQKLILA VNTNVAWLQP VMTSNNYDSF VHLIIDFIVK 1260 RLEVIMMQKR FSQLGGLQLD KEVRSLINHF SEMSQRPVRD KFSRLSQMST ILNFERVSEI 1320 LDFWGDNAGH LTWLLTPAEV RRVLGLRTDF RPEAIAALRL * 1380 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 5.0e-77 | 28 | 313 | 288 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 9.0e-78 | 20 | 315 | 309 | + pectinesterase family protein | ||
| smart00762 | Cog4 | 3.0e-79 | 808 | 1102 | 308 | + COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport. | ||
| PLN02682 | PLN02682 | 4.0e-86 | 26 | 305 | 288 | + pectinesterase family protein | ||
| PLN02773 | PLN02773 | 4.0e-159 | 1 | 321 | 322 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD32707.1 | 0 | 621 | 1360 | 11 | 747 | Conserved oligomeric Golgi complex component 4, related [Medicago truncatula] |
| GenBank | EAZ22920.1 | 0 | 600 | 1360 | 1 | 761 | hypothetical protein OsJ_06610 [Oryza sativa Japonica Group] |
| RefSeq | NP_001154198.1 | 0 | 629 | 1360 | 16 | 738 | unknown protein [Arabidopsis thaliana] |
| RefSeq | XP_002267721.1 | 0 | 623 | 1360 | 382 | 1111 | PREDICTED: similar to pentatricopeptide (PPR) repeat-containing protein [Vitis vinifera] |
| RefSeq | XP_002468432.1 | 0 | 600 | 1360 | 1 | 762 | hypothetical protein SORBIDRAFT_01g045870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hr0_B | 0 | 1116 | 1360 | 11 | 263 | A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric Golgi Subunit 4 |
| PDB | 3hr0_A | 0 | 1116 | 1360 | 11 | 263 | A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric Golgi Subunit 4 |
| PDB | 1gq8_A | 0 | 12 | 286 | 7 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4e-38 | 15 | 327 | 5 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-18 | 19 | 285 | 4 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Hydropathy |
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