| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G179444_T01 |
| Family | GH28 |
| Protein Properties | Length: 314 Molecular Weight: 34508.2 Isoelectric Point: 6.0945 |
| Chromosome | Chromosome/Scaffold: 8 Start: 121177893 End: 121180407 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 32 | 235 | 0 |
| IAPLPSYGRGRDEPGARYSNFIGGSNLTDVIITGKNGTINGKGQVWWDKFHAKELKFIRGHLLELLYSENIIISNVTFVNAPYWNLHPTYCTNVTISGVT ILAPVNSPNTDGIDPKSSSRVKIEDCYIVSGDDCVAVKSGWDEYGIRFNMPSQHIVIQRLTSVSPTSAMIALSSEMSGGIRDVRAKDSVAINTESAIRVK TLGA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 314 Download |
| MAYGDRVITF EDSEKESEYG YVRKDMKHWP LIAPLPSYGR GRDEPGARYS NFIGGSNLTD 60 VIITGKNGTI NGKGQVWWDK FHAKELKFIR GHLLELLYSE NIIISNVTFV NAPYWNLHPT 120 YCTNVTISGV TILAPVNSPN TDGIDPKSSS RVKIEDCYIV SGDDCVAVKS GWDEYGIRFN 180 MPSQHIVIQR LTSVSPTSAM IALSSEMSGG IRDVRAKDSV AINTESAIRV KTLGAIAGVL 240 SRNELVAAAL FTLAINHKQV DVFSFGIVLW EILTGEEPYA NMHCGAIIAL IEVITSQATS 300 WSCYRTDQAP NHD* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 4.0e-15 | 52 | 232 | 191 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 7.0e-17 | 52 | 171 | 120 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-20 | 56 | 171 | 116 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-27 | 51 | 241 | 196 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-33 | 23 | 238 | 229 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0004672 | protein kinase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 24 | 232 | 83 | 291 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 24 | 232 | 129 | 337 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001048813.1 | 0 | 24 | 232 | 109 | 317 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 24 | 246 | 114 | 335 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002468601.1 | 0 | 24 | 253 | 114 | 343 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-26 | 88 | 232 | 187 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-26 | 88 | 232 | 187 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-26 | 88 | 232 | 187 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-26 | 88 | 232 | 187 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000008 | 43 | 241 | 93 | 292 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
|---|
 |
