| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G179696_T03 |
| Family | GH28 |
| Protein Properties | Length: 542 Molecular Weight: 58088.6 Isoelectric Point: 7.8365 |
| Chromosome | Chromosome/Scaffold: 8 Start: 146183315 End: 146187469 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 167 | 494 | 0 |
| AAACKKGACTVLVPPELEFLVGPISFSGPYCKSNIVFQLEGTILAPTSAKSWGSGLLQWLEFTKLNGMVIQGNGIINGRGQQWWTYSDTEDEDDDDTYDV EFERMPQIKPTALRFYGSFNVVVAGITIVNSSQCHLKFDNCQGVMVHDLTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCISIQTGCSNINIHNVN CGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMNGVRIKTWQGGVGLVQDIRFSNIQVSEVQTPIIIDQFYCDRSTCRNQTSAVAVSGVQYENIRGTF TIKPVHFACSDSLPCSGISLTGVQLRPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 542 Download |
| MKLRAKGIGL LLLLVLLALC STIEVGEARR GKHWRSSRSS PGSSQLKKGK GKKSSSHRQY 60 GANRPGPKPP VSSTPSSGAG KGNHQNPYQP SPSPSPNAPD IPPMPSPANG SRHSTPEPPA 120 PSCGKGQQQP SQPPPATSQG AVFNVVDFGA KGDGVTDDTK AFEGAWAAAC KKGACTVLVP 180 PELEFLVGPI SFSGPYCKSN IVFQLEGTIL APTSAKSWGS GLLQWLEFTK LNGMVIQGNG 240 IINGRGQQWW TYSDTEDEDD DDTYDVEFER MPQIKPTALR FYGSFNVVVA GITIVNSSQC 300 HLKFDNCQGV MVHDLTISSP ENSLNTDGIH LQNSKDVSIH HTNLACGDDC ISIQTGCSNI 360 NIHNVNCGPG HGISIGGLGR DNTKACVSNV TVRDVNMFRT MNGVRIKTWQ GGVGLVQDIR 420 FSNIQVSEVQ TPIIIDQFYC DRSTCRNQTS AVAVSGVQYE NIRGTFTIKP VHFACSDSLP 480 CSGISLTGVQ LRPVQVPHYH LNNPFCWQAF GELYTPTVPP IACLQIGKPA GNNLQSYDDI 540 C* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-59 | 143 | 491 | 354 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-63 | 143 | 492 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-65 | 144 | 492 | 354 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-68 | 177 | 491 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-81 | 142 | 524 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 1 | 541 | 1 | 541 | unknown [Zea mays] |
| RefSeq | NP_001043666.1 | 0 | 20 | 541 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 1 | 541 | 1 | 541 | polygalacturonase [Zea mays] |
| RefSeq | NP_001150912.1 | 0 | 20 | 541 | 20 | 536 | polygalacturonase [Zea mays] |
| RefSeq | XP_002456022.1 | 0 | 1 | 541 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-26 | 236 | 439 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 216 | 491 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 216 | 491 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 216 | 491 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 216 | 491 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
