| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G323418_T01 |
| Family | PL1 |
| Protein Properties | Length: 439 Molecular Weight: 49138.6 Isoelectric Point: 9.4197 |
| Chromosome | Chromosome/Scaffold: 9 Start: 20154595 End: 20156665 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 153 | 357 | 0 |
| IQDRPLWIVFARDMVIELRQELIVNHNKTIDGRGAQVHIMFAQITLQNVQNVILHNLHIHDSKAHSGGMIRDSKRHYGLRTRSDGDGVSVLSSSNVWIDH VSMSSCSDGLIDVVNGSTAITVSNSHFTDHDHVMLFGASNDSPQDAVMQVTVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNMNPTIISQG NRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 439 Download |
| MAAVIRSRRR VSVFFYVVLA AAAAAAAAQA SNNVTSDEEY WAERAEVARS RNLAAYVSDP 60 VAATNRFNAD VLRATTRRAL ARYDGPCMAT NPIDRCWRCR ADWATDRKRL AQCARGFGHR 120 TVGGAAGKLY VVRDPSDDEM IIPRKGTLRH AVIQDRPLWI VFARDMVIEL RQELIVNHNK 180 TIDGRGAQVH IMFAQITLQN VQNVILHNLH IHDSKAHSGG MIRDSKRHYG LRTRSDGDGV 240 SVLSSSNVWI DHVSMSSCSD GLIDVVNGST AITVSNSHFT DHDHVMLFGA SNDSPQDAVM 300 QVTVAFNHFG RGLVQRMPRC RYGFFHVVNN DYTHWIMYAI GGNMNPTIIS QGNRFIAPDD 360 PNAKEVTKRE YTPYKDYKEW VWKSQGDVMM NGAFFNESGG QNERKYDRFD FIPAKHGRYV 420 GQLTRFAGPL KCIVGQPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-13 | 33 | 71 | 39 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 1.0e-29 | 121 | 355 | 250 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-59 | 172 | 355 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-71 | 165 | 359 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA16476.1 | 0 | 1 | 438 | 1 | 438 | pectate lyase homolog [Zea mays] |
| DDBJ | BAD68402.1 | 0 | 2 | 438 | 3 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
| GenBank | EAY99626.1 | 0 | 2 | 438 | 3 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | NP_001056781.1 | 0 | 2 | 438 | 15 | 450 | Os06g0144200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437815.1 | 0 | 1 | 438 | 4 | 444 | hypothetical protein SORBIDRAFT_10g003090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 91 | 428 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 91 | 428 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-25 | 121 | 346 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 6e-17 | 171 | 393 | 73 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.00000000000004 | 171 | 355 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
